Debian Med Physics packages

Pakiet oparty jest na bibliotece BioSig i zawiera narzędzia wiersza poleceń, takie jak:

• save2gdf: konwerter pomiędzy różnymi formatami plików, takimi jak: (lecz nie ograniczający się do nich) SCP-ECG (EN1064), HL7aECG (FDA-XML), GDF, EDF, BDF, CWFB.
• biosig2gdf: konwertuje pliki danych biosig do formatu GDF, aby uprościć analizowanie i ładowanie językom skryptowym (np.loadgdf.{py,r}).
• rec2bin, bin2rec, heka2itx, save2aecg, save2scp: kilka narzędzi konwertujących opartych na save2gdf.
• biosig_fhir: pakuje dane biosygnałowe do binarnego pliku szablonu HL7/FHIR.
• physicalunits: konwerter do kodowania i dekodowania jednostek fizycznych zgodnie z ISO 11073-10101.

GDF (General Dataformat for Biosignals - powszechny format danych do biosygnałów) służy do uniwersalnego przechowywania biosygnałów, takich jak EEG, EKG, MEG itd.

Pakiet zawiera narzędzie dostarczane z biblioteką (gdf_merger).

Octave to (głównie kompatybilny z MATLAB®) język wysokiego poziomu, przeznaczony zwłaszcza do obliczeń numerycznych. Zapewnia on wygodny interfejs wiersza poleceń do rozwiązywania liniowych oraz nieliniowych zadań metodami numerycznymi.

Octave może być dynamicznie rozszerzony o dostarczone przez użytkownika pliki C++.

CERNLIB to zestaw narzędzi do analizy danych oraz biblioteka stworzona na potrzeby fizyki doświadczalnej, zawiera jednak również aplikacje pomocne w innych dziedzinach, takich jak nauki biologiczne.

PAW jest interaktywnym programem zawierającym narzędzia do graficznej prezentacji oraz do analizy statystycznej i matematycznej. Jest przeznaczony do pracy na obiektach bliskich fizykom takich jak histogramy, pliki zdarzeń (Ntuples), wektory itp.

W celu poprawnego funkcjonowania, na architekturach 64-bitowych, program jest łączony statycznie z biblioteką CERN, gdyż nie był projektowany na taką architekturę.

CERNLIB is a suite of data analysis tools and libraries created for use in physics experiments, but also with applications to other fields such as the biological sciences.

This package includes Paw++, an interactive program for use in analysis and graphical presentation. Paw++ is the same program as PAW (in the "paw" package), but with a more user-friendly Motif-based GUI, compiled against Lesstif in Debian.

The program is linked statically against the CERN libraries on 64-bit architectures in order to function properly, as its design is not very 64-bit clean.

R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files.

The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme.

The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations.

Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'.

This package is a metapackage which eases the transition from the pre-1.5.0 package setup with its larger r-base package. Once installed, it can be safely removed and apt-get will automatically upgrade its components during future upgrades. Providing this package gives a way to users to then only install r-base-core if they so desire.

BioSig is a library for accessing files in several biomedical data formats (including EDF, BDF, GDF, BrainVision, BCI2000, CFWB, HL7aECG, SCP_ECG (EN1064), MFER, ACQ, CNT(Neuroscan), DEMG, EGI, EEG1100, FAMOS, SigmaPLpro, TMS32). The complete list of supported file formats is available at http://pub.ist.ac.at/~schloegl/biosig/TESTED .

This package provides header files and static library.

Pakiet zawiera dowiązania Octave do biblioteki BioSig. Główny cel - interfejs I/O (wejścia/wyjścia danych) do różnych formatów plików biomedycznych, w tym: SCP-ECG (EN1064), HL7aECG (FDA-XML), GDF, EDF itd.

CERNLIB is a suite of data analysis tools and libraries created for use in physics experiments, but also with applications to other fields such as the biological sciences.

This package includes example scripts for use by PAW or Paw++, and test scripts to make sure that the PAW or Paw++ programs behave correctly. You may run the examples and tests with the included paw-demos program.

This package provides Python3 bindings for BioSig library. Primary goal -- I/O interface to variety of biomedical file formats, including but not limited to SCP-ECG(EN1064), HL7aECG (FDA-XML), GDF, EDF.

Multiple-tau correlation is computed on a logarithmic scale (less data points are computed) and is thus much faster than conventional correlation on a linear scale such as numpy.correlate

An online reference is available at http://paulmueller.github.io/multipletau

This is the Python 3 version of the package

GATE incorporates the Geant4 libraries in a modular, versatile, and scripted simulation toolkit which is adapted to the field of nuclear medicine both in PET (Positron Emission Tomography) and SPECT (Single Photon Emission Computer Tomography). It allows the accurate description of time-dependent phenomena such as source or detector movement and source decay kinetics. The ability to synchronize all time-dependent components allows a coherent description of the acquisition process. It makes it possible to perform realistic simulations of data acquisitions in time.

OpenViBE enables to design, test and use Brain-Computer Interfaces (BCI). OpenViBE is a software for real-time neurosciences (that is, for real-time processing of brain signals). It can be used to acquire, filter, process, classify and visualize brain signals in real time.