Summary
Physics
Debian Med packages for medical physicists
This metapackage contains dependencies for a
collection of software and documentation which is useful for
medical physicists in radiation oncology, diagnostics imaging
and related fields.
Description
For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:
If you discover a project which looks like a good candidate for Debian Med
to you, or if you have prepared an unofficial Debian package, please do not hesitate to
send a description of that project to the Debian Med mailing list
Links to other tasks
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Debian Med Physics packages
Official Debian packages with high relevance
biosig-tools
format conversion tools for biomedical data formats
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Versions of package biosig-tools |
Release | Version | Architectures |
trixie | 2.6.1-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 2.1.2-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 2.5.0-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
jessie | 1.3.0-2 | amd64,armel,armhf,i386 |
sid | 2.6.1-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
stretch | 1.3.0-2.2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
buster | 1.9.3-2 | amd64,arm64,armhf,i386 |
Debtags of package biosig-tools: |
interface | commandline |
role | program |
use | converting |
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License: DFSG free
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Based on BioSig library, this package provides command line
tools, such as
- save2gdf: converter between different file formats, including but
not limited to SCP-ECG(EN1064), HL7aECG (FDA-XML), GDF, EDF,
BDF, CWFB.
- biosig2gdf: converts biosig data files into GDF, to simplify
parsing and loading by scripting languages (e.g. loadgdf.{py,r})
- rec2bin, bin2rec, heka2itx, save2aecg, save2scp: several converter
tools based on save2gdf
- biosig_fhir: packs biosignal data into HL7/FHIR binary template file.
- physicalunits: converter for encoding and decoding of physical
units according to ISO 11073-10101
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gdf-tools
IO library for the GDF -- helper tools
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Versions of package gdf-tools |
Release | Version | Architectures |
bullseye | 0.1.3-8 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
stretch | 0.1.2-2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 0.1.2-2 | amd64,armel,armhf,i386 |
buster | 0.1.2-2.1 | amd64,arm64,armhf,i386 |
bookworm | 0.1.3-11 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 0.1.3-11.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 0.1.3-11.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
Debtags of package gdf-tools: |
role | program |
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License: DFSG free
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GDF (General Dataformat for Biosignals) is intended to provide a generic
storage for biosignals, such as EEG, ECG, MEG etc.
This package provides the tool shipped with the library
(gdf_merger).
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octave
GNU Octave language for numerical computations
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Versions of package octave |
Release | Version | Architectures |
bullseye | 6.2.0-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
sid | 9.2.0-3 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 9.2.0-3 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 7.3.0-2 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster-backports | 5.2.0-3~bpo10+1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 4.4.1-5 | amd64,arm64,armhf,i386 |
stretch-backports | 4.4.1-4~bpo9+1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el |
stretch-backports | 4.4.0-3~bpo9+1 | s390x |
stretch | 4.0.3-3 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 3.8.2-4 | amd64,armel,armhf,i386 |
Debtags of package octave: |
field | mathematics |
role | program |
suite | gnu |
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License: DFSG free
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Octave is a (mostly MATLAB® compatible) high-level language, primarily
intended for numerical computations. It provides a convenient command-line
interface for solving linear and nonlinear problems numerically.
Octave can be dynamically extended with user-supplied C++ files.
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paw
Physics Analysis Workstation - nástroj pro grafickou analýzu
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Versions of package paw |
Release | Version | Architectures |
stretch | 2.14.04.dfsg.2-9.1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
buster | 2.14.04.dfsg.2-9.1 | amd64,arm64,armhf,i386 |
jessie | 2.14.04.dfsg.2-9 | amd64,armel,armhf,i386 |
Debtags of package paw: |
field | physics |
interface | x11 |
role | program |
scope | utility |
uitoolkit | xlib |
use | viewing |
x11 | application |
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License: DFSG free
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CERNLIB je kolekce nástrojů datové analýzy, knihoven vytvořených
pro použití ve fyzikálních experimentech a konečně i aplikací
určených k jiným úkolům jako je použití v biologii.
PAW je interaktivní program obsahující interaktivní prezentační a
statistické a matematické nástroje. Je vytvořen tak, aby pracoval
s objekty známými z fyziky jako jsou histogramy, soubory událostí
(Ntuples), vektory, atd.
Program je na 64b architektuře linkován staticky proti knihovnám CERN.
Je to především z důvodu stability programu, protože jeho kód se
nechová v 64b prostředí zcela nejlépe.
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paw++
Physics Analysis Workstation (verze rozšířená o Lesstif)
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Versions of package paw++ |
Release | Version | Architectures |
buster | 2.14.04.dfsg.2-9.1 | amd64,arm64,armhf,i386 |
stretch | 2.14.04.dfsg.2-9.1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 2.14.04.dfsg.2-9 | amd64,armel,armhf,i386 |
Debtags of package paw++: |
field | physics |
interface | x11 |
role | program |
scope | utility |
uitoolkit | motif |
use | viewing |
x11 | application |
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License: DFSG free
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CERNLIB je kolekce nástrojů datové analýzy, knihoven vytvořených
pro použití ve fyzikálních experimentech a konečně i aplikací
určených k jiným úkolům jako je použití v biologii.
Tento balíček obsahuje Paw++, interaktivní program používaný při analýze
a grafické prezentaci. Paw++ dělá to samé jako PAW (obsažený v balíčku
"paw"), ale má mnohem příjemnější grafické uživatelské rozhraní kompilované
vůči Lesstif.
Program je na 64b architektuře staticky linkován proti knihovnám CERN,
je to z důvodu správné funkčnosti programu, neboť jeho konstrukce není
zcela kompatibilní s 64b systémem.
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r-base
GNU R statistical computation and graphics system
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Versions of package r-base |
Release | Version | Architectures |
buster | 3.5.2-1 | all |
stretch | 3.3.3-1 | all |
bullseye | 4.0.4-1 | all |
bookworm | 4.2.2.20221110-2 | all |
trixie | 4.4.1-3 | all |
sid | 4.4.1-3 | all |
jessie | 3.1.1-1+deb8u1 | all |
jessie-security | 3.1.1-1+deb8u1 | all |
Debtags of package r-base: |
devel | lang:r |
field | statistics |
role | dummy, metapackage |
suite | gnu |
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License: DFSG free
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R is a system for statistical computation and graphics. It consists
of a language plus a run-time environment with graphics, a debugger,
access to certain system functions, and the ability to run programs
stored in script files.
The design of R has been heavily influenced by two existing languages:
Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
resulting language is very similar in appearance to S, the underlying
implementation and semantics are derived from Scheme.
The core of R is an interpreted computer language which allows
branching and looping as well as modular programming using functions.
Most of the user-visible functions in R are written in R. It is
possible for the user to interface to procedures written in the
C, C++, or FORTRAN languages for efficiency, and many of R's core
functions do so. The R distribution contains functionality for a
large number of statistical procedures and underlying applied math
computations. There is also a large set of functions which provide
a flexible graphical environment for creating various kinds of data
presentations.
Additionally, several thousand extension "packages" are available from
CRAN, the Comprehensive R Archive Network, many also as Debian packages,
named 'r-cran-'.
This package is a metapackage which eases the transition from the
pre-1.5.0 package setup with its larger r-base package. Once installed, it
can be safely removed and apt-get will automatically upgrade its components
during future upgrades. Providing this package gives a way to users to
then only install r-base-core if they so desire.
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Official Debian packages with lower relevance
libbiosig-dev
I/O library for biomedical data - development files
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Versions of package libbiosig-dev |
Release | Version | Architectures |
trixie | 2.6.1-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
stretch | 1.3.0-2.2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 1.3.0-2 | amd64,armel,armhf,i386 |
buster | 1.9.3-2 | amd64,arm64,armhf,i386 |
sid | 2.6.1-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 2.1.2-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 2.5.0-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
Debtags of package libbiosig-dev: |
devel | examples, library |
role | devel-lib |
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License: DFSG free
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BioSig is a library for accessing files in several biomedical data formats
(including EDF, BDF, GDF, BrainVision, BCI2000, CFWB, HL7aECG,
SCP_ECG (EN1064), MFER, ACQ, CNT(Neuroscan), DEMG, EGI, EEG1100,
FAMOS, SigmaPLpro, TMS32). The complete list of supported file
formats is available at http://pub.ist.ac.at/~schloegl/biosig/TESTED .
This package provides header files and static library.
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octave-biosig
Octave bindings for BioSig library
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Versions of package octave-biosig |
Release | Version | Architectures |
bookworm | 2.5.0-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 2.1.2-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 2.6.1-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
buster | 1.9.3-2 | amd64,arm64,armhf,i386 |
stretch | 1.3.0-2.2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 1.3.0-2 | amd64,armel,armhf,i386 |
sid | 2.6.1-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
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License: DFSG free
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This package provides Octave bindings for BioSig library. Primary
goal -- I/O interface to variety of biomedical file formats, including
but not limited to SCP-ECG(EN1064), HL7aECG (FDA-XML), GDF, EDF.
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paw-demos
Ukázky a testy PAW (Physics Analysis Workstation)
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Versions of package paw-demos |
Release | Version | Architectures |
jessie | 2.14.04.dfsg.2-9 | all |
stretch | 2.14.04.dfsg.2-9.1 | all |
buster | 2.14.04.dfsg.2-9.1 | all |
Debtags of package paw-demos: |
devel | examples, testing-qa |
field | physics |
interface | commandline, x11 |
role | program |
x11 | application |
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License: DFSG free
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CERNLIB je kolekce nástrojů datové analýzy, knihoven vytvořených
pro použití ve fyzikálních experimentech a konečně i aplikací
určených k jiným úkolům jako je použití v biologii.
Tento balíček obsahuje ukázkové skripty PAW a Paw++, testovací skripty
které vás ujistí o tom zda se programy PAW a Paw++ chovají korektně.
Obsažené příklady a testy můžete spustit spolu s programem paw-demos.
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python3-biosig
Python3 bindings for BioSig library
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Versions of package python3-biosig |
Release | Version | Architectures |
sid | 2.6.1-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 2.5.0-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 2.1.2-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 1.9.3-2 | amd64,arm64,armhf,i386 |
trixie | 2.6.1-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
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License: DFSG free
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This package provides Python3 bindings for BioSig library. Primary
goal -- I/O interface to variety of biomedical file formats, including
but not limited to SCP-ECG(EN1064), HL7aECG (FDA-XML), GDF, EDF.
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python3-multipletau
multiple-tau algorithm for Python3/NumPy
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Versions of package python3-multipletau |
Release | Version | Architectures |
sid | 0.4.1+ds-1 | all |
trixie | 0.4.1+ds-1 | all |
bookworm | 0.3.3+ds-4 | all |
jessie | 0.1.4-1 | all |
stretch | 0.1.7+ds-1 | all |
bullseye | 0.3.3+ds-3 | all |
buster | 0.3.3+ds-1 | all |
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License: DFSG free
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Multiple-tau correlation is computed on a logarithmic scale (less
data points are computed) and is thus much faster than conventional
correlation on a linear scale such as numpy.correlate
An online reference is available
at http://paulmueller.github.io/multipletau
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No known packages available but some record of interest (WNPP bug)
Geant4 Application for Emission Tomography
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License: LGPL
Debian package not available
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GATE incorporates the Geant4 libraries in a modular, versatile, and
scripted simulation toolkit which is adapted to the field of nuclear
medicine both in PET (Positron Emission Tomography) and SPECT (Single
Photon Emission Computer Tomography). It allows the accurate description
of time-dependent phenomena such as source or detector movement and
source decay kinetics. The ability to synchronize all time-dependent
components allows a coherent description of the acquisition process. It
makes it possible to perform realistic simulations of data acquisitions
in time.
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platform for the design, test and use of BCI
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License: LGPL
Debian package not available
Language: C++
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OpenViBE enables to design, test and use Brain-Computer Interfaces (BCI).
OpenViBE is a software for real-time neurosciences (that is, for
real-time processing of brain signals). It can be used to acquire, filter,
process, classify and visualize brain signals in real time.
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