Debian Med Project
Help us to see Debian used by medical practitioners and biomedical researchers! Join us on the Salsa page.
Summary
Physics
Debian Med packages for medical physicists

This metapackage contains dependencies for a collection of software and documentation which is useful for medical physicists in radiation oncology, diagnostics imaging and related fields.

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Med to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Med mailing list

Links to other tasks

Debian Med Physics packages

Official Debian packages with high relevance

biosig-tools
??? missing short description for package biosig-tools :-(
Versions of package biosig-tools
ReleaseVersionArchitectures
sid3.9.5-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
forky3.9.5-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
trixie3.9.0-1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
bookworm2.5.0-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye2.1.2-4amd64,arm64,armhf,i386
Debtags of package biosig-tools:
interfacecommandline
roleprogram
useconverting
Popcon: 13 users (15 upd.)*
Versions and Archs
License: DFSG free
Git
Please cite: Alois Schlögl and Clemens Brunner: BioSig: A Free and Open Source Software Library for BCI Research. (eprint) Computer 41(10):44-50 (2008)
gdf-tools
??? missing short description for package gdf-tools :-(
Versions of package gdf-tools
ReleaseVersionArchitectures
bullseye0.1.3-8amd64,arm64,armhf,i386
bookworm0.1.3-11amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
trixie0.1.3-11.1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
forky0.1.3-16amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
sid0.1.3-16amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
Debtags of package gdf-tools:
roleprogram
Popcon: 13 users (11 upd.)*
Versions and Archs
License: DFSG free
Git
Please cite: Alois Schlögl: GDF – A general dataformat for BIOSIGNALS. The Computing Research Repository abs/cs/0608052 (2006)
octave
??? missing short description for package octave :-(
Versions of package octave
ReleaseVersionArchitectures
sid11.1.0-4amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bullseye6.2.0-1amd64,arm64,armhf,i386
forky11.1.0-4amd64,arm64,armhf,i386,ppc64el,riscv64,s390x
trixie9.4.0-1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
bookworm7.3.0-2amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Debtags of package octave:
fieldmathematics
roleprogram
suitegnu
Popcon: 559 users (547 upd.)*
Versions and Archs
License: DFSG free
Git
The package is enhanced by the following packages: liboctave-dev octave-dev octave-doc texmacs-bin
Please cite: John W. Eaton, David Bateman, Søren Hauberg and Rik Wehbring: GNU Octave version 4.2.0 manual: a high-level interactive language for numerical computations. (2016)
Registry entries: SciCrunch 
r-base
??? missing short description for package r-base :-(
Maintainer: Dirk Eddelbuettel
Versions of package r-base
ReleaseVersionArchitectures
bullseye4.0.4-1all
bookworm4.2.2.20221110-2all
trixie4.5.0-3all
forky4.5.3-1all
sid4.6.0-3all
Debtags of package r-base:
devellang:r
fieldstatistics
roledummy, metapackage
suitegnu
Popcon: 64 users (40 upd.)*
Versions and Archs
License: DFSG free
Git
The package is enhanced by the following packages: texmacs-bin
Screenshots of package r-base

Official Debian packages with lower relevance

libbiosig-dev
??? missing short description for package libbiosig-dev :-(
Versions of package libbiosig-dev
ReleaseVersionArchitectures
bookworm2.5.0-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
bullseye2.1.2-4amd64,arm64,armhf,i386
trixie3.9.0-1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
forky3.9.5-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
sid3.9.5-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
Debtags of package libbiosig-dev:
develexamples, library
roledevel-lib
Popcon: 0 users (2 upd.)*
Versions and Archs
License: DFSG free
Git
Please cite: Alois Schlögl and Clemens Brunner: BioSig: A Free and Open Source Software Library for BCI Research. (eprint) Computer 41(10):44-50 (2008)
octave-biosig
??? missing short description for package octave-biosig :-(
Versions of package octave-biosig
ReleaseVersionArchitectures
sid3.9.5-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bullseye2.1.2-4amd64,arm64,armhf,i386
forky3.9.5-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
trixie3.9.0-1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
bookworm2.5.0-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
Popcon: 0 users (0 upd.)*
Versions and Archs
License: DFSG free
Git
Please cite: Alois Schlögl and Clemens Brunner: BioSig: A Free and Open Source Software Library for BCI Research. (eprint) Computer 41(10):44-50 (2008)
python3-biosig
??? missing short description for package python3-biosig :-(
Versions of package python3-biosig
ReleaseVersionArchitectures
forky3.9.5-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
bookworm2.5.0-1amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x
trixie3.9.0-1amd64,arm64,armel,armhf,i386,ppc64el,riscv64,s390x
bullseye2.1.2-4amd64,arm64,armhf,i386
sid3.9.5-1amd64,arm64,armhf,i386,loong64,ppc64el,riscv64,s390x
Popcon: 3 users (2 upd.)*
Versions and Archs
License: DFSG free
Git
Please cite: Alois Schlögl and Clemens Brunner: BioSig: A Free and Open Source Software Library for BCI Research. (eprint) Computer 41(10):44-50 (2008)
python3-multipletau
??? missing short description for package python3-multipletau :-(
Versions of package python3-multipletau
ReleaseVersionArchitectures
sid0.4.1+ds-1all
bullseye0.3.3+ds-3all
bookworm0.3.3+ds-4all
trixie0.4.1+ds-1all
forky0.4.1+ds-1all
Popcon: 18 users (35 upd.)*
Versions and Archs
License: DFSG free
Git

Packaging has started and developers might try the packaging code in VCS

paw
Physics Analysis Workstation - a graphical analysis program
Versions of package paw
ReleaseVersionArchitectures
VCS1:2.14.04.dfsg.2-10all
Versions and Archs
License: free
Debian package not available
Git
Version: 1:2.14.04.dfsg.2-10

CERNLIB is a suite of data analysis tools and libraries created for use in physics experiments, but also with applications to other fields such as the biological sciences.

PAW is an interactive program providing interactive graphical presentation and statistical and mathematical analysis tools. It is designed to work on objects familiar to physicists such as histograms, event files (Ntuples), vectors, etc.

The program is linked statically against the CERN libraries on 64-bit architectures in order to function properly, as its design is not very 64-bit clean.

paw++
Physics Analysis Workstation (Lesstif-enhanced version)
Versions of package paw++
ReleaseVersionArchitectures
VCS1:2.14.04.dfsg.2-10all
Versions and Archs
License: free
Debian package not available
Git
Version: 1:2.14.04.dfsg.2-10

CERNLIB is a suite of data analysis tools and libraries created for use in physics experiments, but also with applications to other fields such as the biological sciences.

This package includes Paw++, an interactive program for use in analysis and graphical presentation. Paw++ is the same program as PAW (in the "paw" package), but with a more user-friendly Motif-based GUI, compiled against Lesstif in Debian.

The program is linked statically against the CERN libraries on 64-bit architectures in order to function properly, as its design is not very 64-bit clean.

paw-demos
Physics Analysis Workstation examples and tests
Versions of package paw-demos
ReleaseVersionArchitectures
VCS1:2.14.04.dfsg.2-10all
Versions and Archs
License: free
Debian package not available
Git
Version: 1:2.14.04.dfsg.2-10

CERNLIB is a suite of data analysis tools and libraries created for use in physics experiments, but also with applications to other fields such as the biological sciences.

This package includes example scripts for use by PAW or Paw++, and test scripts to make sure that the PAW or Paw++ programs behave correctly. You may run the examples and tests with the included paw-demos program.

No known packages available but some record of interest (WNPP bug)

gate - wnpp
Geant4 Application for Emission Tomography
Responsible: Nicolas Spalinger
License: LGPL
Debian package not available

GATE incorporates the Geant4 libraries in a modular, versatile, and scripted simulation toolkit which is adapted to the field of nuclear medicine both in PET (Positron Emission Tomography) and SPECT (Single Photon Emission Computer Tomography). It allows the accurate description of time-dependent phenomena such as source or detector movement and source decay kinetics. The ability to synchronize all time-dependent components allows a coherent description of the acquisition process. It makes it possible to perform realistic simulations of data acquisitions in time.

openvibe - wnpp
platform for the design, test and use of BCI
License: LGPL
Debian package not available
Language: C++

OpenViBE enables to design, test and use Brain-Computer Interfaces (BCI). OpenViBE is a software for real-time neurosciences (that is, for real-time processing of brain signals). It can be used to acquire, filter, process, classify and visualize brain signals in real time.

*Popularitycontest results: number of people who use this package regularly (number of people who upgraded this package recently) out of 284384