Debian Med Project
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Summary
Tools
Debian Med several tools

This metapackage will install tools for several purposes in health care. Currently it contains some simple programs for Personal Health.

The list to the right includes various software projects which are of some interest to the Debian Med Project. Currently, only a few of them are available as Debian packages. It is our goal, however, to include all software in Debian Med which can sensibly add to a high quality Debian Pure Blend.

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Med to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Med mailing list

Links to other tasks

Debian Med Tools packages

Official Debian packages with high relevance

Edfbrowser
viewer for biosignal storage files such as bdf and edf
Versions of package edfbrowser
ReleaseVersionArchitectures
squeeze1.24-1amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc
wheezy1.48-1amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
jessie1.51-1amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
sid1.51-1amd64,armel,armhf,hurd-i386,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
Debtags of package edfbrowser:
interfacex11
roleprogram
uitoolkitqt
useviewing
x11application
Popcon: 4 users (8 upd.)*
Versions and Archs
License: DFSG free
Svn

EDFbrowser is a viewer for medical timeseries storage files containing data such as EEG, EMG, and ECG signals. It supports EDF(+) and BDF(+) file formats. Apart from viewing the files, it also supports some editing operations and can convert the biomedical files to other formats.

Please cite: Martin Wolgast, Lars-Gunnar Lundh and Gardar Viborg: Cognitive reappraisal and acceptance: An experimental comparison of two emotion regulation strategies. Behaviour Research and Therapy 49(12):858–866 (2011)
Hunspell-de-med
German medical dictionary for hunspell
Maintainer: Tobias Quathamer
Versions of package hunspell-de-med
ReleaseVersionArchitectures
squeeze20100204-1all
wheezy20110608-1all
jessie20110608-1all
sid20110608-1all
Debtags of package hunspell-de-med:
culturegerman
made-ofdictionary
roleapp-data
usechecking
Popcon: 5 users (6 upd.)*
Versions and Archs
License: DFSG free

This package contains a German medical dictionary for use with the hunspell spellchecker which is currently used within OpenOffice.org2 and as an ispell clone.

Hunspell-en-med
English medical dictionary for hunspell
Versions of package hunspell-en-med
ReleaseVersionArchitectures
jessie0.0.20080513-1all
sid0.0.20080513-1all
Popcon: 3 users (1 upd.)*
Versions and Archs
License: DFSG free
Git

This package contains an English medical dictionary for use with the hunspell spell checker which is currently used by OpenOffice.org2

Pcalendar
track menstrual cycles and predict fertility periods
Versions of package pcalendar
ReleaseVersionArchitectures
wheezy3.2.0-2all
jessie3.2.0-2all
sid3.2.0-2all
experimental3.3.0-1all
upstream3.3.0
Debtags of package pcalendar:
interfacex11
roleprogram
x11application
Popcon: 42 users (3 upd.)*
Newer upstream!
License: DFSG free
Svn

Periodic Calendar is a GUI application which assists in women menstrual cycles tracking and fertility periods prediction. This information can be used as supportive either for conception or contraception planning.

Periodic Calendar provides support for BBT and sympto-thermal methods which have the highest reliability in fertility periods prediction. User can choose any subset of the features to be used or even fall to the generic calendar method (which if used alone is very unreliable).

Authors of the Periodic Calendar still insist on not being an equal substitute to the fertility planning consultants or doctors. Before using this application please talk to your doctor or read a good book on the subject.

THE PREDICTIONS MADE BY THIS PROGRAM CAN BE NEVER BE CONSIDERED AS FINAL. THE METHODS USED ARE NOT 100% EFFECTIVE FOR ALL WOMEN.

Screenshots of package pcalendar
Pondus
personal weight manager for GTK+2
Maintainer: Eike Nicklas
Versions of package pondus
ReleaseVersionArchitectures
squeeze0.7.2-1all
wheezy0.8.0-1all
jessie0.8.0-1all
sid0.8.0-1all
Debtags of package pondus:
fieldmedicine
interfacex11
roleprogram
scopeutility
uitoolkitgtk
usemonitor
x11application
Popcon: 20 users (7 upd.)*
Versions and Archs
License: DFSG free
Svn

Pondus keeps track of your body weight and, optionally, the percentage of bodyfat, muscle and water. It aims to be simple to use, lightweight and fast. All data can be plotted to get a quick overview of the history of your weight. A simple weight planner allows one to define "target weights" and this plan can be compared with the actual measurements in a plot.

Other screenshots of package pondus
VersionURL
0.5.3-1http://screenshots.debian.net/screenshots/p/pondus/2101_large.png
Screenshots of package pondus
Python-clips
Python module to interface the CLIPS expert system shell library
Versions of package python-clips
ReleaseVersionArchitectures
jessie1.0.7.348+clips-1amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
sid1.0.7.348+clips-1amd64,armel,armhf,hurd-i386,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
Popcon: 1 users (1 upd.)*
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License: DFSG free
Svn

CLIPS is an expert system shell / inference engine written by NASA (see Debian package clips).

pyclips are the Python bindings to that engine.

Quitcount
Small tool which may help yourself quit smoking
Maintainer: Ricardo Mones
Versions of package quitcount
ReleaseVersionArchitectures
squeeze1.7-1amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc
wheezy2.0-1amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
jessie2.0-1amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
sid2.0-1amd64,armel,armhf,hurd-i386,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
Debtags of package quitcount:
fieldmedicine, statistics
interfacex11
roleprogram
scopeapplication
uitoolkitgtk
usemeasuring
works-withpeople
x11application
Popcon: 15 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

QuitCount is a simple counter that shows what you spared since you quit smoking. Once you tell it the date you quit, how much you smoked, and how much it cost, it'll tell you how many cigarettes you didn't smoke since, and how much it makes in terms of money, tar, and life expectancy.

Screenshots of package quitcount
Wgerman-medical
German medical dictionary words for /usr/share/dict
Maintainer: Tobias Quathamer
Versions of package wgerman-medical
ReleaseVersionArchitectures
squeeze20100204-1all
wheezy20110608-1all
jessie20110608-1all
sid20110608-1all
Debtags of package wgerman-medical:
culturegerman
made-ofdictionary
roleapp-data
usechecking
Popcon: 13 users (11 upd.)*
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License: DFSG free

This package provides the file /usr/share/dict/german-medical containing a list of German medical words. This list can be used by spelling checkers, and by programs such as look(1).

Workrave
Repetitive Strain Injury prevention tool
Maintainer: Francois Marier
Versions of package workrave
ReleaseVersionArchitectures
squeeze1.9.1-3amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc
wheezy1.9.909+abc941eb70-1amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
jessie1.9.909+abc941eb70-1amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
sid1.9.909+abc941eb70-1amd64,armel,armhf,hurd-i386,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
upstream1.10
Debtags of package workrave:
hardwareinput
interfacex11
roleprogram
scopeutility
suitegnome
uitoolkitgtk
usemonitor
x11applet, application
Popcon: 541 users (79 upd.)*
Newer upstream!
License: DFSG free
Git

Workrave is a program that assists in the recovery and prevention of Repetitive Strain Injury (RSI). The program frequently alerts you to take micro-pauses, rest breaks and restricts you to your daily limit.

It includes a system tray applet that works with GNOME and KDE and has network capabilities to monitor your activity even if switching back and forth between different computers is part of your job.

Workrave offers many more configuration options than other similar tools.

Other screenshots of package workrave
VersionURL
1.9.0-6http://screenshots.debian.net/screenshots/w/workrave/872_large.png
Screenshots of package workrave

Official Debian packages with lower relevance

Cl-pubmed
Common Lisp package to query Pubmed medical literature database
Maintainer: Kevin M. Rosenberg
Versions of package cl-pubmed
ReleaseVersionArchitectures
squeeze2.1.3-5all
wheezy2.1.3-5all
jessie2.1.3-5all
sid2.1.3-5all
Debtags of package cl-pubmed:
devellang:lisp, library
fieldbiology
Popcon: 0 users (0 upd.)*
Versions and Archs
License: DFSG free
Git

This library has functions for querying the PubMed medical literature database and parsing the XML results into Common Lisp objects. This package uses the cl-aserve for HTTP fetches.

Cycle
calendar program for women
Versions of package cycle
ReleaseVersionArchitectures
squeeze0.3.1-7all
wheezy0.3.1-8all
jessie0.3.1-8all
sid0.3.1-8all
Debtags of package cycle:
interfacex11
roleprogram
uitoolkitwxwidgets
usetimekeeping
Popcon: 37 users (10 upd.)*
Versions and Archs
License: DFSG free

Cycle is a calendar for women. Given a cycle length or statistics for several periods, it can calculate the days until menstruation, the days of "safe" sex, the fertile period, and the days to ovulations, and define the d.o.b. of a child. It allows the user to write notes and helps to supervise the administration of hormonal contraceptive tablets.

Possibilities of the program:

  • Calculate days of menstruation, based on the length of the cycle or on statistics of previous periods.
  • Calculate days of "safe" sex, fertile period and day to ovulations.
  • Definition of D.O.B. (Date Of Birth) of a child
  • Allows to write notes.
  • Helps to supervise reception of hormonal contraceptive tablets.
  • Multiple users allowed. Data is protected by a password for every user.

NOTE: This program is not a reliable contraceptive method. It does neither help to prevent sexual transmision diseases like AIDS. It is just an electronic means of keeping track of some of your medical data and extract some statistical conclusions from them. You cannot consider this program as a substitute for your gynecologist in any way.

Screenshots of package cycle
Remark of Debian Med team: Use pcalendar instead

Please consider using pcalendar instead of cycle because cycle is outdated, not maintained any more and pcalendar simply overpasses it.

Entangle
Tethered Camera Control & Capture
Versions of package entangle
ReleaseVersionArchitectures
jessie0.5.1-1amd64,armel,armhf,i386,ia64,mips,mipsel,powerpc,s390,s390x,sparc
sid0.5.1-1amd64,armel,armhf,i386,ia64,mips,mipsel,powerpc,s390,s390x,sparc
Debtags of package entangle:
uitoolkitgtk
Popcon: 6 users (33 upd.)*
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License: DFSG free
Git

Entangle provides a graphical interface for "tethered shooting", aka taking photographs with a digital camera completely controlled from the computer.

Using Entangle is as easy as 1,2,3...

  • Connect camera
  • Launch Entangle
  • Shoot photos

With a sufficiently capable digital SLR camera Entangle allows:

  • Trigger the shutter from the computer
  • Live preview of scene before shooting
  • Automatic download and display of photos as they are shot
  • Control of all camera settings from computer
Screenshots of package entangle
Mencal
A menstruation calendar
Versions of package mencal
ReleaseVersionArchitectures
squeeze2.3-9all
wheezy2.3-9all
jessie2.3-9all
sid2.3-9all
Debtags of package mencal:
fieldmedicine
interfacecommandline
roleprogram
scopeutility
usetimekeeping
Popcon: 8 users (3 upd.)*
Versions and Archs
License: DFSG free
Svn

Mencal is a menstruation calendar written in Perl.

It is a simple variation of the well-known Unix command cal. The main difference is that you can have some periodically repeating days highlighted in color. This can be used to track menstruation (or other) cycles conveniently.

Author: C. McCohy mccohy@kyberdigi.cz

Screenshots of package mencal
Remark of Debian Med team: Use pcalendar instead

Please consider using pcalendar instead of mencal because mencal is outdated, not maintained any more and pcalendar simply overpasses it.

Debian packages in contrib or non-free

Mssstest
Normalisation of disease scores for patients with Multiple Sclerosis
Versions of package mssstest
ReleaseVersionArchitectures
squeeze3.0-2 (non-free)i386
wheezy3.0-3 (non-free)amd64,i386
jessie3.0-3 (non-free)amd64,i386
sid3.0-3 (non-free)amd64,i386
Debtags of package mssstest:
fieldmedicine
interfacecommandline
roleprogram
scopeutility
usechecking
works-withpeople
works-with-formatplaintext
Popcon: 2 users (0 upd.)*
Versions and Archs
License: non-free
Svn

MSSStest is a program for implementing the method described in the article The Multiple Sclerosis Severity Score. R. Roxburgh S. Seaman et al. (2004), accepted for publication by Neurology. It calculates MSSS scores and uses these scores to test for differences between disease progression rates in different groups defined by genotype at some locus. A brief description of the method is given below.

Please cite: R H S R Roxburgh, S R Seaman, T Masterman, A E Hensiek, S J Sawcer, S Vukusic, I Achiti, C Confavreux, M Coustans, E le Page, G Edan, G V McDonnell, S Hawkins, M Trojano, M Liguori, E Cocco, M G Marrosu, F Tesser, M A Leone, A Weber, F Zipp, B Miterski, J T Epplen, A Oturai, P Soelberg Sorensen, E G Celius, N Tellez Lara, X Montalban, P Villoslada, A M Silva, M Marta, I Leite, B Dubois, J Rubio, H Butzkueven, T Kilpatrick, M P Mycko, K W Selmaj, M E Rio, M Sa, G Salemi, G Savettieri, J Hillert and D A S Compston: Multiple Sclerosis Severity Score: using disability and disease duration to rate disease severity. (PubMed,eprint) Neurology 64(7):1144-51 (2005)
*Popularitycontest results: number of people who use this package regularly (number of people who upgraded this package recently) out of 154006