Debian Med Project
Help us to see Debian used by medical practitioners and biomedical researchers! Join us on the Alioth page.
Summary
Tools
différents utilitaires de Debian Med

Ce méta-paquet installera des outils à des fins diverses pour la santé. Pour l'instant, il contient quelques programmes pour la santé personnelle.

Description

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Med to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Med mailing list

Links to other tasks

Debian Med Tools packages

Official Debian packages with high relevance

Cronometer
CRON-o-Meter - Exercise and nutrient intake tracker
Versions of package cronometer
ReleaseVersionArchitectures
wheezy0.9.9-2all
jessie0.9.9-2all
sid0.9.9-2all
jessie0.9.9+dfsg-1all
stretch0.9.9+dfsg-1all
sid0.9.9+dfsg-1all
Popcon: 14 users (3 upd.)*
Versions and Archs
License: DFSG free
Git

Easy to use daily nutrient intake tracker that includes nutritional information on over 8000 foods. User can create, import and export custom foods and recipes as well as set personal targets for each nutrient. CRON-O-Meter can also track and chart your biometrics (weight, blood pressure, temperature, etc) and generate detailed reports on your nutritional intake.

Edfbrowser
viewer for biosignal storage files such as bdf and edf
Versions of package edfbrowser
ReleaseVersionArchitectures
squeeze1.24-1amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc
wheezy1.48-1amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
jessie1.51-1s390
sid1.51-1s390
jessie1.53-1ia64,sparc
sid1.53-1ia64
jessie1.54-2amd64,arm64,armel,armhf,i386,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,ppc64el,s390x
sid1.56-1sparc
stretch1.57-1amd64,arm64,armel,armhf,i386,mips,mipsel,powerpc,ppc64el,s390x
sid1.57-1amd64,arm64,armel,armhf,hurd-i386,i386,kfreebsd-amd64,kfreebsd-i386,mips,mips64el,mipsel,powerpc,ppc64el,s390x
Debtags of package edfbrowser:
interfacegraphical, x11
roleprogram
uitoolkitqt
useviewing
x11application
Popcon: 5 users (13 upd.)*
Versions and Archs
License: DFSG free
Svn

EDFbrowser is a viewer for medical timeseries storage files containing data such as EEG, EMG, and ECG signals. It supports EDF(+) and BDF(+) file formats. Apart from viewing the files, it also supports some editing operations and can convert the biomedical files to other formats.

Please cite: Martin Wolgast, Lars-Gunnar Lundh and Gardar Viborg: Cognitive reappraisal and acceptance: An experimental comparison of two emotion regulation strategies. Behaviour Research and Therapy 49(12):858–866 (2011)
Hunspell-de-med
dictionnaire médical allemand pour hunspell
Versions of package hunspell-de-med
ReleaseVersionArchitectures
squeeze20100204-1all
wheezy20110608-1all
jessie20110608-1all
sid20110608-1all
stretch20160103-1all
sid20160103-1all
Debtags of package hunspell-de-med:
culturegerman
made-ofdictionary
roleapp-data
usechecking
Popcon: 2 users (16 upd.)*
Versions and Archs
License: DFSG free

Ce paquet fournit un dictionnaire médical allemand à utiliser avec le vérificateur orthographique hunspell dont se sert actuellement LibreOffice comme clone d'ispell.

Hunspell-en-med
dictionnaire médical anglais pour hunspell
Versions of package hunspell-en-med
ReleaseVersionArchitectures
jessie0.0.20080513-1all
sid0.0.20080513-1all
jessie0.0.20080513-2all
stretch0.0.20080513-2all
sid0.0.20080513-2all
Popcon: 6 users (8 upd.)*
Versions and Archs
License: DFSG free
Git

Ce paquet fournit un dictionnaire médical anglais à utiliser avec le vérificateur orthographique hunspell dont se sert actuellement LibreOffice.

Nut-nutrition
logiciel d'analyse diététique
Versions of package nut-nutrition
ReleaseVersionArchitectures
squeeze15.5-1amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc
wheezy15.5-1amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
jessie15.5-1ia64,s390,sparc
sid15.5-1ia64,s390
jessie20.1-2amd64,arm64,armel,armhf,i386,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,ppc64el,s390x
stretch20.1-2amd64,arm64,armel,armhf,i386,mips,mipsel,powerpc,ppc64el,s390x
sid20.1-2amd64,arm64,armel,armhf,hurd-i386,i386,kfreebsd-amd64,kfreebsd-i386,mips,mips64el,mipsel,powerpc,ppc64el,s390x,sparc
Debtags of package nut-nutrition:
interfacecommandline
roleprogram
scopeapplication
useorganizing
works-withpim
Popcon: 9 users (6 upd.)*
Versions and Archs
License: DFSG free
Git

Ce logiciel vous aide à enregistrer ce que vous mangez pour ensuite analyser vos repas selon les niveaux nutritionnels en terme de « Valeur journalière » USDA (la norme pour la labelisation de nourriture aux États-Unis).

Screenshots of package nut-nutrition
Pcalendar
suivi du cycle menstruel et prévision des périodes de fertilité
Versions of package pcalendar
ReleaseVersionArchitectures
wheezy3.2.0-2all
jessie3.3.0-2all
sid3.3.0-2all
jessie3.3.0-3all
sid3.3.0-3all
jessie3.4.0-1all
stretch3.4.0-1all
sid3.4.0-1all
upstream3.4.1
Debtags of package pcalendar:
interfacegraphical, x11
roleprogram
x11application
Popcon: 31 users (2 upd.)*
Newer upstream!
License: DFSG free
Svn

Periodic Calendar est une application graphique pour aider au suivi du cycle menstruel et à la prévision des périodes de fertilité. Cette information peut aider soit pour la planification de la conception ou de la contraception.

Periodic Calendar fournit une aide pour les méthodes de température basale ou sympto-thermiques qui sont les plus fiables dans la prévision des périodes de fertilité. Les utilisatrices peuvent choisir parmi les diverses fonctions ou même choisir la méthode du calendrier (qui utilisée seule n’est pas très sûre).

Les auteurs de ce logiciel insistent lourdement que ce n’est pas un substitut aussi performant que les consultants sur la contraception ou les docteurs. Avant d’utiliser cette application, parlez à votre médecin ou lisez un bon livre sur le sujet.

LES PRÉVISIONS FAITES PAR CE LOGICIEL NE DOIVENT JAMAIS ÊTRE CONSIDÉRÉES COMME EXACTES. LES MÉTHODES UTILISÉES NE SONT JAMAIS EFFICACES À 100% POUR TOUTES LES FEMMES.

Other screenshots of package pcalendar
VersionURL
3.2.0-2http://screenshots.debian.net/screenshots/p/pcalendar/8842_large.png
Screenshots of package pcalendar
Pondus
personal weight manager for GTK+2
Versions of package pondus
ReleaseVersionArchitectures
squeeze0.7.2-1all
wheezy0.8.0-1all
jessie0.8.0-1all
sid0.8.0-1all
jessie0.8.0-2all
stretch0.8.0-2all
sid0.8.0-2all
Debtags of package pondus:
fieldmedicine
interfacegraphical, x11
roleprogram
scopeutility
uitoolkitgtk
usemonitor
x11application
Popcon: 21 users (5 upd.)*
Versions and Archs
License: DFSG free
Svn

Pondus keeps track of your body weight and, optionally, the percentage of bodyfat, muscle and water. It aims to be simple to use, lightweight and fast. All data can be plotted to get a quick overview of the history of your weight. A simple weight planner allows one to define "target weights" and this plan can be compared with the actual measurements in a plot.

Other screenshots of package pondus
VersionURL
0.5.3-1http://screenshots.debian.net/screenshots/p/pondus/2101_large.png
Screenshots of package pondus
Python-clips
Python module to interface the CLIPS expert system shell library
Versions of package python-clips
ReleaseVersionArchitectures
jessie1.0.7.348+clips-1amd64,arm64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,ppc64el,s390,s390x,sparc
stretch1.0.7.348+clips-1amd64,arm64,armel,armhf,i386,mips,mipsel,powerpc,ppc64el,s390x
sid1.0.7.348+clips-1amd64,arm64,armel,armhf,hurd-i386,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mips64el,mipsel,powerpc,ppc64el,s390,s390x,sparc
Popcon: 6 users (1 upd.)*
Versions and Archs
License: DFSG free
Svn

CLIPS is an expert system shell / inference engine written by NASA (see Debian package clips).

pyclips are the Python bindings to that engine.

Python-fitbit
FitBit REST API Client Implementation
Versions of package python-fitbit
ReleaseVersionArchitectures
sid0.0.3-1all
jessie0.1.2-1all
sid0.1.3-1all
stretch0.1.3-2all
sid0.1.3-2all
Debtags of package python-fitbit:
devellang:python, library
fieldmedicine, statistics
roledevel-lib
sciencedata-acquisition
Popcon: 1 users (1 upd.)*
Versions and Archs
License: DFSG free
Git

A Python module containing an implementation of a client for the FitBit REST API. It uses OAuth for authentication, it supports both US and SI units.

Quitcount
Small tool which may help yourself quit smoking
Maintainer: Ricardo Mones
Versions of package quitcount
ReleaseVersionArchitectures
squeeze1.7-1amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc
wheezy2.0-1amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
jessie2.0-2s390
sid2.0-2s390
jessie3.0-1ia64,sparc
sid3.0-1ia64
jessie3.1.3-2amd64,arm64,armel,armhf,i386,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,ppc64el,s390x
stretch3.1.3-2amd64,arm64,armel,armhf,i386,mips,mipsel,powerpc,ppc64el,s390x
sid3.1.3-2amd64,arm64,armel,armhf,hurd-i386,i386,kfreebsd-amd64,kfreebsd-i386,mips,mips64el,mipsel,powerpc,ppc64el,s390x,sparc
Debtags of package quitcount:
fieldmedicine, statistics
interfacegraphical, x11
roleprogram
scopeapplication
uitoolkitgtk
usemeasuring
works-withpeople
x11application
Popcon: 7 users (1 upd.)*
Versions and Archs
License: DFSG free
Git

QuitCount is a simple counter that shows what you spared since you quit smoking. Once you tell it the date you quit, how much you smoked, and how much it cost, it'll tell you how many cigarettes you didn't smoke since, and how much it makes in terms of money, tar, and life expectancy.

Screenshots of package quitcount
Wgerman-medical
dictionnaire médical allemand pour /usr/share/dict
Versions of package wgerman-medical
ReleaseVersionArchitectures
squeeze20100204-1all
wheezy20110608-1all
jessie20110608-1all
sid20110608-1all
stretch20160103-1all
sid20160103-1all
Debtags of package wgerman-medical:
culturegerman
made-ofdictionary
roleapp-data
usechecking
Popcon: 16 users (27 upd.)*
Versions and Archs
License: DFSG free

Ce paquet fournit le fichier /usr/share/dict/german-medical qui contient une liste de mots allemands du domaine médical. Cette liste peut être utilisée par les vérificateurs orthographiques et par des programmes tels que look(1).

Workrave
Repetitive Strain Injury prevention tool
Maintainer: Francois Marier
Versions of package workrave
ReleaseVersionArchitectures
squeeze1.9.1-3amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc
wheezy1.9.909+abc941eb70-1amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
jessie1.10.1-2s390
sid1.10.1-2s390
jessie1.10.1-3ia64
jessie1.10.1-4sparc
sid1.10.1-4ia64
jessie1.10.4-3amd64,arm64,armel,armhf,i386,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,ppc64el,s390x
sid1.10.6-2sparc
stretch1.10.10-1amd64,arm64,armel,armhf,i386,mips,mipsel,powerpc,ppc64el,s390x
sid1.10.10-1amd64,arm64,armel,armhf,hurd-i386,i386,kfreebsd-amd64,kfreebsd-i386,mips,mips64el,mipsel,powerpc,ppc64el,s390x
Debtags of package workrave:
hardwareinput
interfacegraphical, x11
roleprogram
scopeutility
suitegnome
uitoolkitgtk
usemonitor
x11applet, application
Popcon: 420 users (58 upd.)*
Versions and Archs
License: DFSG free
Git

Workrave is a program that assists in the recovery and prevention of Repetitive Strain Injury (RSI). The program frequently alerts you to take micro-pauses, rest breaks and restricts you to your daily limit.

It includes a system tray applet that works with GNOME and KDE and has network capabilities to monitor your activity even if switching back and forth between different computers is part of your job.

Workrave offers many more configuration options than other similar tools.

Other screenshots of package workrave
VersionURL
1.9.0-6http://screenshots.debian.net/screenshots/w/workrave/872_large.png
Screenshots of package workrave

Official Debian packages with lower relevance

Cycle
programme de calendrier pour femme
Versions of package cycle
ReleaseVersionArchitectures
squeeze0.3.1-7all
wheezy0.3.1-8all
jessie0.3.1-9all
sid0.3.1-9all
jessie0.3.1-11all
stretch0.3.1-11all
sid0.3.1-11all
Debtags of package cycle:
interfacegraphical, x11
roleprogram
uitoolkitwxwidgets
usetimekeeping
Popcon: 30 users (4 upd.)*
Versions and Archs
License: DFSG free
Svn

Cycle est un calendrier pour femme. Étant donnée une longueur de cycle ou de statistiques de plusieurs règles, il peut calculer le nombre de jours jusqu'à la menstruation, les jours de sexe « sûr », la période de fertilité et les jours d'ovulation et définir la date de naissance d'un enfant. Il permet à l'utilisatrice d'écrire des notes et d'aider à suivre l'administration de plaquette d'hormones contraceptives.

Possibilités du programme⋅:

  • calcul des jours de menstruation, basé sur la longueur du cycle ou sur des statistiques de cycles précédents ;
  • calcul des jours de rapports sexuels «⋅sûrs⋅», de la période de fertilité et du jour des ovulations ;
  • définition de la date de naissance d'un enfant ;
  • possibilité d'écrire des notes personnelles ;
  • assiste la supervision d'administration de pilules contraceptives hormonales ;
  • Utilisatrices multiples. Les données sont protégées par un mot de passe pour chaque utilisatrice.

NOTE⋅: Ce programme n'est pas une méthode contraceptive fiable. Il n'empêche pas non plus la transmission de MST comme le SIDA. Il s'agit juste d'un moyen électronique de conserver une trace d'une partie de vos données médicales et d'en tirer quelques conclusions statistiques. Vous ne devez en aucune manière considérer ce programme comme un remplaçant de votre gynécologue.

Screenshots of package cycle
Remark of Debian Med team: Use pcalendar instead

Please consider using pcalendar instead of cycle because cycle is outdated, not maintained any more and pcalendar simply overpasses it.

Entangle
Tethered Camera Control & Capture
Versions of package entangle
ReleaseVersionArchitectures
jessie0.5.3-1s390
sid0.5.3-1s390
jessie0.5.4-1ia64
sid0.5.4-1ia64
jessie0.5.4-2sparc
jessie0.6.0-2amd64,arm64,armel,armhf,i386,mips,mipsel,powerpc,ppc64el,s390x
stretch0.7.0-3amd64,arm64,armel,armhf,i386,mips,mipsel,powerpc,ppc64el,s390x
sid0.7.0-3amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,powerpc,ppc64el,s390x,sparc
Debtags of package entangle:
uitoolkitgtk
Popcon: 28 users (22 upd.)*
Versions and Archs
License: DFSG free
Git

Entangle provides a graphical interface for "tethered shooting", aka taking photographs with a digital camera completely controlled from the computer.

Using Entangle is as easy as 1,2,3...

  • Connect camera
  • Launch Entangle
  • Shoot photos

With a sufficiently capable digital SLR camera Entangle allows:

  • Trigger the shutter from the computer
  • Live preview of scene before shooting
  • Automatic download and display of photos as they are shot
  • Control of all camera settings from computer
Screenshots of package entangle
Goldencheetah
set of analysis tools for cycling performance
Maintainer: KURASHIKI Satoru
Versions of package goldencheetah
ReleaseVersionArchitectures
wheezy2.1-4amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
jessie3.0-3s390
sid3.0-3s390
jessie3.0.1-1ia64
sid3.0.1-2ia64
jessie3.0.2-1sparc
jessie3.1.0-1amd64,arm64,armel,armhf,i386,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,ppc64el,s390x
sid3.1.0-1sparc
stretch3.2.0-1amd64,arm64,armel,armhf,i386,mips,mipsel,powerpc,ppc64el,s390x
sid3.2.0-1armel,armhf
sid3.3.0-1amd64,arm64,i386,kfreebsd-amd64,kfreebsd-i386,mips,mips64el,mipsel,powerpc,ppc64el,s390x
Debtags of package goldencheetah:
uitoolkitqt
Popcon: 23 users (2 upd.)*
Versions and Archs
License: DFSG free
Git

GoldenCheetah is a software package that:

  • Downloads ride data directly from the CycleOps PowerTap and the SRM PowerControl V. Support for SRM PowerControl VI and VII is planned for the future.
  • Imports ride data downloaded with other programs, including TrainingPeaks WKO+ and the manufacturers' software for the Ergomo, Garmin, Polar, PowerTap, and SRM devices.
  • Provides a rich set of analysis tools, including a critical power graph, BikeScore calculation, histogram analysis, a best interval finder, and a pedal force versus pedal velocity chart, to name just a few.
Mencal
menstruation calendar
Versions of package mencal
ReleaseVersionArchitectures
squeeze2.3-9all
wheezy2.3-9all
jessie2.3-9all
sid2.3-9all
jessie3.0-1all
sid3.0-1all
stretch3.0-2all
sid3.0-2all
Debtags of package mencal:
fieldmedicine
interfacecommandline
roleprogram
scopeutility
usetimekeeping
Popcon: 6 users (4 upd.)*
Versions and Archs
License: DFSG free
Svn

Mencal is a menstruation calendar written in Perl.

It is a simple variation of the well-known Unix command cal. The main difference is that you can have some periodically repeating days highlighted in color. This can be used to track menstruation (or other) cycles conveniently.

Screenshots of package mencal
Remark of Debian Med team: Use pcalendar instead

Please consider using pcalendar instead of mencal because mencal is outdated, not maintained any more and pcalendar simply overpasses it.

Sleepyhead
Sleep tracking software with a focus on monitoring CPAP treatment
Versions of package sleepyhead
ReleaseVersionArchitectures
stretch0.9.8-3amd64,arm64,i386,mips,mipsel,powerpc,ppc64el,s390x
sid0.9.8-3amd64,arm64,i386,mips,mips64el,mipsel,powerpc,ppc64el,s390x
Popcon: 1 users (2 upd.)*
Versions and Archs
License: DFSG free
Git

SleepyHead is a Free Software, cross platform research tool for exploring data produced by CPAP (Continuous Positive Airway Pressure) machines, and related equipment, which are used in the treatment of sleep apnea and other sleep disorders.

SleepyHead supports data capable CPAP machine models from the following series:

  • ResMed S9
  • AirSense 10
  • AirCurve 10
  • Philips Respironics System One
  • Fisher & Paykel ICON & ICON+
  • DeVilbiss IntelliPAP

The software supports the full range of Contec CMS50 series of Oximeters, either standalone or synced with CPAP data (although you will need to install a separate driver for Contact equipments). It also supports ResMed and PR System One oximeter attachments and file imports from ChoiceMMed MD300W1 oximeters.

Debian packages in contrib or non-free

Mssstest
Normalisation of disease scores for patients with Multiple Sclerosis
Versions of package mssstest
ReleaseVersionArchitectures
squeeze3.0-2 (non-free)i386
wheezy3.0-3 (non-free)amd64,i386
jessie3.0-3 (non-free)amd64,i386
stretch3.0-3 (non-free)amd64,i386
sid3.0-3 (non-free)i386
sid3.0-4 (non-free)amd64
Debtags of package mssstest:
fieldmedicine
interfacecommandline
roleprogram
scopeutility
usechecking
works-withpeople
works-with-formatplaintext
Popcon: 0 users (0 upd.)*
Versions and Archs
License: non-free
Svn

MSSStest is a program for implementing the method described in the article The Multiple Sclerosis Severity Score. R. Roxburgh S. Seaman et al. (2004), accepted for publication by Neurology. It calculates MSSS scores and uses these scores to test for differences between disease progression rates in different groups defined by genotype at some locus. A brief description of the method is given below.

Please cite: R H S R Roxburgh, S R Seaman, T Masterman, A E Hensiek, S J Sawcer, S Vukusic, I Achiti, C Confavreux, M Coustans, E le Page, G Edan, G V McDonnell, S Hawkins, M Trojano, M Liguori, E Cocco, M G Marrosu, F Tesser, M A Leone, A Weber, F Zipp, B Miterski, J T Epplen, A Oturai, P Soelberg Sorensen, E G Celius, N Tellez Lara, X Montalban, P Villoslada, A M Silva, M Marta, I Leite, B Dubois, J Rubio, H Butzkueven, T Kilpatrick, M P Mycko, K W Selmaj, M E Rio, M Sa, G Salemi, G Savettieri, J Hillert and D A S Compston: Multiple Sclerosis Severity Score: using disability and disease duration to rate disease severity. (PubMed,eprint) Neurology 64(7):1144-51 (2005)
*Popularitycontest results: number of people who use this package regularly (number of people who upgraded this package recently) out of 190404