Debian Med Project
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Summary
Bugs of task cloud
Total bugs: 59
Open bugs: 39
Fixed bugs: 20
Links to other tasks
Biology 214 (1472)
Biology development 119 (1181)
Phylogeny 9 (45)
Cloud 39 (381)
Covid-19 148 (1401)
Medical data 1 (1)
Dental 1 (3)
Epidemiology 8 (110)
Imaging 209 (1052)
Laboratory 1 (9)
Oncology 1 (3)
Pharmacology 1 (9)
Physics 25 (159)
Practice 7 (42)
Psychology 6 (46)
Research 0 (0)
Statistics 3 (7)
Tools 38 (241)
Typesetting 61 (490)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 6 0
important 4 0
normal 11 0
minor 14 0
wishlist 4 0

Summary bugs page of task Cloud

Immediately looking into bugs of the dependencies of this task is advised (381)*

Open bugs in dependent packages

6 serious, 4 important, 11 normal, 14 minor, 4 wishlist
920282 abyss fails to build on hurd - googletest EXPECT_DEATH
1012893 anfo: ftbfs with GCC-12 bookworm, ftbfs, help, sid, trixie
1061888 anfo: NMU diff for 64-bit time_t transition patch
1035113 arden: please add autopkgtests (to add coverage for python3-numpy)
1036488 arden: please add autopkgtests (to add coverage for python3-matplotlib)
865130 reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz' ftbfs, upstream
1043837 concavity: Fails to build source after successful build ftbfs, sid, trixie
982869 datamash FTBFS on !x86 32bit: FAIL: tests/decorate-errors ftbfs, upstream
1044977 datamash: Fails to build source after successful build ftbfs, sid, trixie
1057439 datamash: "antimode" returns lowest, instead of least common, value
1045047 dssp: Fails to build source after successful build ftbfs, sid, trixie
682042 emboss-data: ships bulky taxonomy and gene ontology data
986043 emboss: uses media types that are not registered
1049797 freecontact: Fails to build binary packages again after successful build ftbfs, sid, trixie
1062403 freecontact: NMU diff for 64-bit time_t transition patch, pending, sid, trixie
644397 Provide runtime detection for CPU SIMD capabilities upstream
983942 gromacs: ftbfs with -march=x86-64-v3
1048028 hisat2: Fails to build source after successful build ftbfs, sid, trixie
1045517 infernal: Fails to build source after successful build ftbfs, sid, trixie
1021557 jellyfish: Performance regression in 2.3.0 (orders of magnitude for some inputs) upstream
1048396 last-align: Fails to build source after successful build ftbfs, sid, trixie
1048833 melting: Fails to build source after successful build ftbfs, sid, trixie
891197 Please switch to pcre2 sid, trixie
956850 ncbi-blast+: Please provide /usr/bin/legacy_blast.pl
984871 ncbi-blast+: Missing headers for shared libraries
1010110 ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception' wontfix
225651 ncbi-tools-x11: want Cn3D++
1064245 ncbi-tools6: NMU diff for 64-bit time_t transition patch, pending, sid, trixie
1048822 plink2: Fails to build source after successful build ftbfs, sid, trixie
1045454 primer3: Fails to build source after successful build ftbfs, sid, trixie
1064147 ftbfs: test failures affecting Bio.SeqIO.SeqXmIIO ftbfs, sid
1058479 python-cogent: please (temporarily) drop python3-numba dependencies wontfix
917851 seqan2 2.4.0+dfsg-9: FTBFS, alignment problem ftbfs
1047218 seqan2: Fails to build source after successful build ftbfs, sid, trixie
1040391 sra-toolkit: broken symlink: /usr/lib/debian-med/bin/kget -> ../../../bin/vdb-get
1053411 sra-sdk: FTBFS with re2 >= 20230601 (which requires abseil) upstream
1063189 staden-io-lib: NMU diff for 64-bit time_t transition patch, pending, sid, trixie
956848 t-coffee: should use "example" blastpgp.pl
1049170 tree-puzzle: Fails to build source after successful build ftbfs, sid, trixie

Open bugs in suggested packages

Done bugs

1043996 biosquid: Fails to build source after successful build experimental, ftbfs, sid, trixie
1049808 biosquid: Fails to build binary packages again after successful build experimental, ftbfs, sid, trixie
1061931 biosquid: NMU diff for 64-bit time_t transition patch
1061344 emboss-lib: identified for time_t transition but no ABI in shlibs sid, trixie
1044987 fastlink: Fails to build source after successful build ftbfs, sid, trixie
1062071 genometools: NMU diff for 64-bit time_t transition patch
1044834 gff2aplot: Fails to build source after successful build ftbfs, sid, trixie
1061639 FTBFS on riscv64: tries to uses rdcycle, privileged since kernel 6.6 ftbfs, patch, upstream
1061727 gromacs: please add support for loong64
1062344 htslib: NMU diff for 64-bit time_t transition patch
1064157 jellyfish: NMU diff for 64-bit time_t transition patch, sid, trixie
1047612 macs: Fails to build source after successful build ftbfs, sid, trixie
1056813 macs: ftbfs with cython 3.0.x patch, sid, trixie, upstream
1057991 macs: runtime dependency on cython sid, trixie
1045311 mira: Fails to build source after successful build ftbfs, sid, trixie
1049789 mira: Fails to build binary packages again after successful build ftbfs, sid, trixie
1064195 ncbi-tools6: NMU diff for 64-bit time_t transition patch, pending, sid, trixie
964082 parsinsert fails it's tests when built with -O2 bookworm, bullseye, sid, trixie
1060965 q2cli: AttributeError: module 'bibtexparser' has no attribute 'bparser' ftbfs, sid, trixie
1060987 q2cli: AttributeError: module 'bibtexparser' has no attribute 'bparser' ftbfs, sid, trixie
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Thu, 29 Feb 2024 18:19:22 -0000