Debian Med Project
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Summary
Bugs of task cloud
Total bugs: 38
Open bugs: 29
Fixed bugs: 9
Links to other tasks
Biology 135 (1263)
Phylogeny 4 (42)
Cloud 29 (354)
Covid-19 133 (1271)
Medical data 0 (0)
Dental 0 (0)
Epidemiology 5 (74)
Imaging 211 (1007)
Laboratory 1 (9)
Oncology 0 (0)
Pharmacology 1 (9)
Physics 26 (201)
Practice 6 (45)
Psychology 2 (24)
Research 0 (0)
Statistics 0 (0)
Tools 32 (209)
Typesetting 60 (464)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 0
serious 4 0
important 8 0
normal 12 0
minor 2 0
wishlist 3 0

Summary bugs page of task Cloud

Immediately looking into bugs of the dependencies of this task is advised (354)*

Open bugs in dependent packages

4 serious, 8 important, 12 normal, 2 minor, 3 wishlist
920282 abyss fails to build on hurd - googletest EXPECT_DEATH
967243 acedb: depends on deprecated GTK 2
1012893 anfo: ftbfs with GCC-12 bookworm, ftbfs, help, sid
865130 reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz' ftbfs, upstream
988848 libbamtools-doc: broken symlink: /usr/share/doc/libbamtools-dev/html/jquery.js -> ../../../javascript/jquery/jquery.js
992143 bamtools: autopkgtest failure: times out on armel
1018316 biomaj3-cli: build-depends on python3-nose or uses it for autopkgtest
982869 datamash FTBFS on !x86 32bit: FAIL: tests/decorate-errors ftbfs, upstream
682042 emboss-data: ships bulky taxonomy and gene ontology data
986043 emboss: uses media types that are not registered
1008220 flexbar 3.5.0-4 FTBFS against libtbb-dev 2021.5.0-7 ftbfs, upstream
1011656 flexbar ftbfs: cannot find tbb header
1012127 flexbar: FTBFS with onetbb/2021.5.0-8 in experimental ftbfs, upstream
1020793 gmap: FTBFS on avx512 host in buster ftbfs
644397 Provide runtime detection for CPU SIMD capabilities upstream
983942 gromacs: ftbfs with -march=x86-64-v3
956751 mummerplot incompatible with Debian's version of gnuplot
891197 Please switch to pcre2
956850 ncbi-blast+: Please provide /usr/bin/legacy_blast.pl
984871 ncbi-blast+: Missing headers for shared libraries
1010110 ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception' wontfix
225651 ncbi-tools-x11: want Cn3D++
964082 parsinsert fails it's tests when built with -O3 bookworm, bullseye, moreinfo, sid, unreproducible
993019 perm -- Buffer overflows
1011156 picard-tools: FTBFS with OpenJDK 17 due to com.sun.javadoc removal bookworm, ftbfs, sid
1009118 python3-biopython: incompatible with muscle >= 5 confirmed, fixed-upstream, upstream, wontfix
892222 seqan2: FTBFS on hppa: app_test_seqan_tcoffee fails on 2trx.mlcs.fasta upstream
917851 seqan2 2.4.0+dfsg-9: FTBFS, alignment problem ftbfs
956848 t-coffee: should use "example" blastpgp.pl

Open bugs in suggested packages

Done bugs

1015861 bamtools: FTBFS with upcoming doxygen 1.9.4 ftbfs
1012913 dssp: ftbfs with GCC-12 bookworm, sid
1012953 jellyfish: ftbfs with GCC-12 bookworm, confirmed, sid, upstream
1017261 jellyfish: FTBFS: dh_missing: error: missing files, aborting bookworm, ftbfs, sid
1017989 src:jellyfish: fails to migrate to testing for too long: unresolved RC bug bookworm, sid
1016941 phyml: flaky autopkgtest on armel: test duration around autopkgtest timeout
1014100 qiime: autopkgtest needs update for new version of python-decorator bookworm, sid
1018609 qiime: build-depends on python3-nose or uses it for autopkgtest
1016743 zalign: autopkgtest failure on 32 bit architectures: Segmentation fault
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Sun, 02 Oct 2022 18:19:49 -0000