Summary

Bugs of task bio-dev

Total bugs: 172

Open bugs: 114

Fixed bugs: 58

Links to other tasks

Tasks overview

Biology 230 (1783)

Biology development 114 (819)

Next generation sequencing 4 (57)

Phylogeny 10 (60)

Cloud 43 (441)

Content management 0 (0)

Covid-19 147 (1382)

Medical data 1 (1)

Dental 1 (3)

Epidemiology 9 (125)

Hospital information systems 1 (9)

Imaging 211 (1005)

Imaging development 83 (719)

Laboratory 1 (9)

Oncology 1 (3)

Pharmacology 1 (9)

Physics 25 (189)

Practice 7 (48)

Psychology 6 (46)

Rehabilitation 0 (0)

Research 0 (0)

Statistics 3 (7)

Tools 37 (226)

Typesetting 62 (499)

Legend

Severity	Dependent	Suggested
critical	0	0
grave	0	0
serious	5	5
important	20	5
normal	19	5
minor	34	6
wishlist	12	3

Summary bugs page of task Biology development

Immediately looking into bugs of the dependencies of this task is advised (819)^*

Open bugs in dependent packages

5 serious, 20 important, 19 normal, 34 minor, 12 wishlist

bamtools (1) Homepage: https://github.com/pezmaster31/bamtools/wiki Vcs Debian Med Packaging Team
865130	reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz'	ftbfs, upstream
fermi-lite (2) Homepage: https://github.com/lh3/fermi-lite Vcs Debian Med Packaging Team
1044647	fermi-lite: Fails to build source after successful build	ftbfs, sid, trixie
1049564	fermi-lite: Fails to build binary packages again after successful build	ftbfs, sid, trixie
gatb-core (2) Homepage: https://github.com/GATB/gatb-core Vcs Debian Med Packaging Team
929564	gatb-core-testdata: broken symlink: /usr/share/doc/gatb-core/test/gatb-core-cppunit -> ../../../../lib/gatb-core/gatb-core-cppunit
983926	gatb-core: ftbfs with -march=x86-64-v2
hdf5 (23) Homepage: http://hdfgroup.org/HDF5/ Vcs Gilles Filippini
638753	libhdf5-serial-1.8.7: threadsafe memory leaks	moreinfo
715959	[Mayhem] Bug report on hdf5-tools: gif2h5 crashes with exit status 139
716008	[Mayhem] Bug report on hdf5-tools: h5copy crashes with exit status 139
716010	[Mayhem] Bug report on hdf5-tools: h5diff crashes with exit status 139
716011	[Mayhem] Bug report on hdf5-tools: h5dump crashes with exit status 139
716012	[Mayhem] Bug report on hdf5-tools: h5import crashes with exit status 139
740613	libhdf5-7: Please include support for compression with libaec
748587	Duplicate and conflicting definitions of variable FILENAME	upstream
839784	libhdf5-dev: pkg-config file references ONLY the C library
915807	hdf5: CVE-2017-17507	security, upstream
958174	hdf5: please add the hdf5plugins
968559	libhdf5-openmpi-dev: hdf5-mpi.pc alternative sometimes goes missing	moreinfo
1023446	libhdf5-openmpi-dev: h5pcc configured as static build
1023820	hdf5: Dependencies not tight enough
1031726	hdf5: CVE-2022-26061 CVE-2022-25972 CVE-2022-25942	security, upstream
1034807	hdf5: CVE-2018-11205	security, upstream
1034838	hdf5: CVE-2019-8396 CVE-2019-8398	security
1040862	hdf5: S3 VFD pulls in networking dependencies (libcurl), please package it as a VFD plugin
1052250	pkg-config file incorrect for static linking
1063856	hdf5: new upstream release
1067758	Please provide a nojava build profile
1067789	hdf5: diff for NMU version 1.10.10+repack-3.2	patch, pending
1067950	hdf5: diff for NMU version 1.10.10+repack-3.3	patch, pending
libai-fann-perl (1) Homepage: https://metacpan.org/release/AI-FANN Vcs Debian Perl Group
948463	libai-fann-perl: Integer overflow leading to heap buffer overflow
libbio-scf-perl (1) Homepage: https://metacpan.org/release/Bio-SCF Vcs Debian Perl Group
599961	libbio-scf-perl: FTBFS: Neither BIG nor LITTLE endian defined
libbpp-core (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1015473	libbpp-core: ftbfs with LTO (link time optimization) enabled	sid, trixie
libbpp-phyl (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1015475	libbpp-phyl: ftbfs with LTO (link time optimization) enabled	sid, trixie
libbpp-popgen (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1015474	libbpp-popgen: ftbfs with LTO (link time optimization) enabled	sid, trixie
libbpp-qt (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1015476	libbpp-qt: ftbfs with LTO (link time optimization) enabled	sid, trixie
libbpp-raa (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1015477	libbpp-raa: ftbfs with LTO (link time optimization) enabled	sid, trixie
libbpp-seq (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1015478	libbpp-seq: ftbfs with LTO (link time optimization) enabled	sid, trixie
libbpp-seq-omics (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1015479	libbpp-seq-omics: ftbfs with LTO (link time optimization) enabled	sid, trixie
libchado-perl (3) Homepage: http://gmod.org/wiki/Chado Vcs Debian Med Packaging Team
1039562	libchado-perl: fails to access database during installation	wontfix
1047661	libchado-perl: Fails to build source after successful build	ftbfs, sid, trixie
1049705	libchado-perl: Fails to build binary packages again after successful build	ftbfs, sid, trixie
libcifpp (3) Homepage: https://github.com/PDB-REDO/libcifpp Vcs Debian Med Packaging Team
1048817	libcifpp: Fails to build source after successful build	ftbfs, sid, trixie
1063191	libcifpp-data: Incorrect URL in update-libcifpp-data script	patch
1068860	[INTL:sv] Swedish strings for libcifpp debconf	l10n, patch
libedlib (1) Homepage: https://github.com/Martinsos/edlib Vcs Debian Med Packaging Team
1015484	libedlib: ftbfs with LTO (link time optimization) enabled	sid, trixie
libgoby-java (1) Homepage: https://campagnelab.org/software/goby/ Vcs Debian Med Packaging Team
1057518	libgoby-java: FTBFS with default Java 21	ftbfs
libmuscle (1) Homepage: http://sourceforge.net/p/mauve/code/HEAD/tree/muscle/trunk/ Vcs Debian Med Packaging Team
1015504	libmuscle: ftbfs with LTO (link time optimization) enabled	sid, trixie
libncl (1) Homepage: https://github.com/mtholder/ncl Vcs Debian Med Packaging Team
1015505	libncl: ftbfs with LTO (link time optimization) enabled	sid, trixie
libpdb-redo (1) Homepage: https://github.com/PDB-REDO/libpdb-redo Vcs Debian Med Packaging Team
1046388	libpdb-redo: Fails to build source after successful build	ftbfs, sid, trixie
librcsb-core-wrapper (1) Homepage: https://sw-tools.rcsb.org/apps/CORE-WRAPPER/index.html Vcs Debian Med Packaging Team
1046372	librcsb-core-wrapper: Fails to build source after successful build	ftbfs, sid, trixie
librostlab (1) Homepage: https://rostlab.org/ Vcs Debian Med Packaging Team
1047025	librostlab: Fails to build source after successful build	ftbfs, sid, trixie
librostlab-blast (1) Homepage: https://rostlab.org/ Vcs Debian Med Packaging Team
1048643	librostlab-blast: Fails to build source after successful build	ftbfs, sid, trixie
libsbml (1) Homepage: http://www.sbml.org/ Vcs Debian Med Packaging Team
1067961	python3-sbml5 depends on swig
libslow5lib (2) Homepage: https://github.com/hasindu2008/slow5lib Vcs Debian Med Packaging Team
1048497	libslow5lib: Fails to build source after successful build	ftbfs, sid, trixie
1049769	libslow5lib: Fails to build binary packages again after successful build	ftbfs, sid, trixie
libssw (1) Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library Vcs Debian Med Packaging Team
1015525	libssw: ftbfs with LTO (link time optimization) enabled	experimental, sid, trixie
macromoleculebuilder (1) Homepage: https://simtk.org/projects/rnatoolbox Vcs Debichem Team
1068925	macromoleculebuilder: FTBFS on armhf (error: inconsistent deduction for auto return type: 'long int' and then 'long long int')	ftbfs
mcl (1) Homepage: https://micans.org/mcl/ Vcs Debian Med Packaging Team
1046152	mcl: Fails to build source after successful build	ftbfs, sid, trixie
ncbi-tools6 (1) Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Vcs Debian Med Packaging Team
225651	ncbi-tools-x11: want Cn3D++
nim-hts (2) Homepage: https://github.com/brentp/hts-nim Vcs Debian Med Packaging Team
1046095	nim-hts: Fails to build source after successful build	ftbfs, sid, trixie
1049588	nim-hts: Fails to build binary packages again after successful build	ftbfs, sid, trixie
openmm (2) Homepage: https://simtk.org/projects/openmm Vcs Debichem Team
1061814	openmm fails its autopkg tests with Python 3.12	ftbfs, patch, sid, trixie
1065911	openmm: Please drop dependencies on python3-distutils
openms (1) Homepage: http://www.openms.de Vcs The Debichem Group
1068052	openms: FTBFS on armel,armhf (error: âQOpenGLFunctions_2_0â does not name a type)	ftbfs
pyfai (1) Homepage: https://github.com/silx-kit/pyFAI Vcs Debian PaN Maintainers
1061938	pyfai: Segfault when closing a dialg
python-biopython (1) Homepage: https://biopython.org Vcs Debian Med Packaging Team
1064147	ftbfs: test failures affecting Bio.SeqIO.SeqXmIIO	ftbfs, sid
python-cobra (1) Homepage: https://opencobra.github.io/cobrapy/ Vcs Debian Med Packaging Team
1067989	python3-cobra: Please replace python3-appdirs dependency with platformdirs	sid, trixie
python-cogent (1) Homepage: https://github.com/cogent3/cogent3 Vcs Debian Med Packaging Team
1058479	python-cogent: please (temporarily) drop python3-numba dependencies	wontfix
python-cooler (1) Homepage: https://github.com/mirnylab/cooler Vcs Debian Med Packaging Team
1069359	python-cooler: FTBFS on arm64: FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpi8kk3ih0/tmp_sf3nv42.multi.cool'	ftbfs, sid, trixie
python-loompy (1) Homepage: https://github.com/linnarsson-lab/loompy Vcs Debian Med Packaging Team
1058482	python-loompy: please (temporarily) drop python3-numba dependencies
python-pybedtools (1) Homepage: https://daler.github.io/pybedtools/ Vcs Debian Med Packaging Team
1068960	python-pybedtools: FTBFS: testsuite error: 14 failed, 491 passed, 2 deselected, 3 xfailed	ftbfs
python-pyspoa (1) Homepage: https://github.com/nanoporetech/pyspoa Vcs Debian Med Packaging Team
1045607	python-pyspoa: Fails to build source after successful build	ftbfs, sid, trixie
python-streamz (1) Homepage: https://github.com/python-streamz/streamz/ Vcs Debian Python Team
1046218	python-streamz: Fails to build source after successful build	ftbfs, sid, trixie
pytorch (4) Homepage: https://pytorch.org/ Vcs Debian Deep Learning Team
983517	pytorch: Build documentation
1056388	FTBFS with fmtlib 10	fixed-upstream, ftbfs
1057644	pytorch: build for all supported Python versions	wontfix
1065941	pytorch: Please drop dependencies on python3-distutils	ftbfs
r-cran-metamix (1) Homepage: https://cran.r-project.org/package=metaMix Vcs Debian R Packages Maintainers
1069509	r-cran-metamix: FTBFS on armhf: tests fail	ftbfs, sid, trixie
rdkit (5) Homepage: http://www.rdkit.org Vcs Debichem Team
927955	python-rdkit: missing module pyAvalonTools
964773	rdkit: Please build rdkit with inchi support	wontfix
983040	rdkit: doesn't ship with inchi support enabled	wontfix
983077	rdkit doesn't ship with inchi support enabled	wontfix
1064311	rdkit: NMU diff for 64-bit time_t transition	patch, sid, trixie
reprof (2) Homepage: https://rostlab.org/ Vcs Debian Med Packaging Team
1045897	reprof: Fails to build source after successful build	ftbfs, sid, trixie
1049597	reprof: Fails to build binary packages again after successful build	ftbfs, sid, trixie
ruby-crb-blast (1) Homepage: https://github.com/cboursnell/crb-blast Vcs Debian Ruby Team
1045625	ruby-crb-blast: Fails to build source after successful build	ftbfs, sid, trixie
seqan2 (2) Homepage: https://www.seqan.de/ Vcs Debian Med Packaging Team
917851	seqan2 2.4.0+dfsg-9: FTBFS, alignment problem	ftbfs
1047218	seqan2: Fails to build source after successful build	ftbfs, sid, trixie
seqan3 (1) Homepage: https://www.seqan.de/ Vcs Debian Med Packaging Team
1048951	seqan3: Fails to build source after successful build	ftbfs, sid, trixie
shasta (1) Homepage: https://github.com/chanzuckerberg/shasta Vcs Debian Med Packaging Team
1069370	shasta: FTBFS: dpkg-shlibdeps: error: cannot continue due to the error above	ftbfs, sid, trixie
sra-sdk (1) Homepage: https://github.com/ncbi/sra-tools/ Vcs Debian Med Packaging Team
1053411	sra-sdk: FTBFS with re2 >= 20230601 (which requires abseil)	upstream

Open bugs in suggested packages

5 serious, 5 important, 5 normal, 6 minor, 3 wishlist

bbhash (1) Homepage: https://github.com/rizkg/BBHash Vcs Debian Med Packaging Team
1049876	bbhash: FTBFS on 32 bit architectures	ftbfs, sid, trixie
bcbio (2) Homepage: https://github.com/bcbio/bcbio-nextgen Vcs Debian Med Packaging Team
928076	bcbio: Workflows not ready for non-developers to depend on.
1018312	bcbio: build-depends on python3-nose or uses it for autopkgtest
btllib (3) Homepage: https://github.com/bcgsc/btllib Vcs Debian Med Packaging Team
1022772	btllib: fails to build on 32-bit archs	wontfix
1032358	btllib: Depends on libsdsl-dev, breaking installability when not needed	patch, pending
1058455	btllib: add build support for loongarch64	patch
concurrentqueue (1) Homepage: https://github.com/cameron314/concurrentqueue Vcs Debian Med Packaging Team
1043870	concurrentqueue: Fails to build source after successful build	ftbfs, sid, trixie
ctdconverter (1) Homepage: https://github.com/WorkflowConversion/CTDConverter Vcs Debian Med Packaging Team
1045042	ctdconverter: Fails to build source after successful build	ftbfs, sid, trixie
cwlformat (1) Homepage: https://github.com/rabix/cwl-format Vcs Debian Med Packaging Team
1069261	cwlformat: fails with newer ruamel.yaml	patch, sid, trixie
freecontact (2) Homepage: https://rostlab.org/ Vcs Debian Med Packaging Team
1049797	freecontact: Fails to build binary packages again after successful build	ftbfs, sid, trixie
1069552	freecontact: FTBFS on armel: make[1]: *** [Makefile:469: all-recursive] Error 1	ftbfs, sid, trixie
intake (3) Homepage: https://github.com/intake/intake Vcs Debian Med Packaging Team
1063953	intake: autopkgtest regression with pytest 8
1064752	intake: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.11" returned exit code 13	ftbfs, sid, trixie
1067969	python3-intake: Please replace python3-appdirs dependency with platformdirs	sid, trixie
libmaus2 (2) Homepage: https://gitlab.com/german.tischler/libmaus2 Vcs Debian Med Packaging Team
934619	libmaus2 FTBFS (mostly 32bit): error: no matching function for call	fixed-upstream, ftbfs, help, upstream
1069691	libmaus2: FTBFS on arm64: what(): AutoArray<unsigned long,alloc_type_memalign_cacheline> failed to allocate 1398102 elements (11184816 bytes)	ftbfs
networkx (1) Homepage: https://networkx.github.io/ Vcs Debian OpenStack
1060444	python3-networkx: postinst warning
python-ncls (1) Homepage: https://github.com/biocore-ntnu/ncls Vcs Debian Python Team
1046648	python-ncls: Fails to build source after successful build	ftbfs, sid, trixie
python-seqcluster (1) Homepage: https://github.com/lpantano/seqcluster Vcs Debian Med Packaging Team
1035277	python-seqcluster: please add autopkgtests (to add coverage for python3-numpy)
q2cli (1) Homepage: https://qiime2.org/ Vcs Debian Med Packaging Team
1066085	q2cli: please make the build reproducible	patch, pending
q2-emperor (1) Homepage: https://qiime2.org/ Vcs Debian Med Packaging Team
1065945	q2-emperor: Please drop dependencies on python3-distutils
q2-sample-classifier (1) Homepage: https://qiime2.org Vcs Debian Med Packaging Team
1065946	q2-sample-classifier: Please drop dependencies on python3-distutils
q2-types (1) Homepage: https://qiime2.org/ Vcs Debian Med Packaging Team
1065333	q2-types: test data heavily outweighs actual code
qiime (1) Homepage: https://qiime2.org Vcs Debian Med Packaging Team
1068006	qiime: Please replace python3-appdirs dependency with platformdirs	sid, trixie

Done bugs

biosquid (1) Homepage: http://eddylab.org/software.html Vcs Debian-Med Packaging Team
1061931	biosquid: NMU diff for 64-bit time_t transition	patch
consensuscore (1) Homepage: https://github.com/PacificBiosciences/ConsensusCore Vcs Debian Med Packaging Team
1067499	libconsensuscore-dev: ships /usr/include/meson.build
ffindex (1) Homepage: https://github.com/ahcm/ffindex Vcs Debian Med Packaging Team
1062588	ffindex: NMU diff for 64-bit time_t transition	patch, sid, trixie
freecontact (1) Homepage: https://rostlab.org/ Vcs Debian Med Packaging Team
1062403	freecontact: NMU diff for 64-bit time_t transition	patch, sid, trixie
genometools (1) Homepage: http://genometools.org Vcs Debian Med Packaging Team
1062071	genometools: NMU diff for 64-bit time_t transition	patch
gffread (1) Homepage: https://ccb.jhu.edu/software/stringtie/gff.shtml Vcs Debian Med Packaging Team
1033703	gffread: autopkgtest regression: test dependency not in testing	bookworm-ignore
hdf5 (3) Homepage: http://hdfgroup.org/HDF5/ Vcs Gilles Filippini
1064095	hdf5: NMU diff for 64-bit time_t transition	patch, sid, trixie
1065331	libhdf5-103-1t64: depends on libcurl4 instead of libcurl4t64
1068320	hdf5: Needs to not depend on libopenmpi-dev for 32-bit systems
htslib (1) Homepage: https://github.com/samtools/htslib Vcs Debian Med Packaging Team
1062344	htslib: NMU diff for 64-bit time_t transition	patch
libbigwig (1) Homepage: https://github.com/dpryan79/libBigWig/ Vcs Debian Med Packaging Team
1062229	libbigwig: NMU diff for 64-bit time_t transition	patch, sid, trixie
libbio-samtools-perl (1) Homepage: https://metacpan.org/release/Bio-SamTools Vcs Debian Perl Group
1065759	libbio-samtools-perl: FTBFS: lib/Bio/DB/Sam.xs:324:4: error: implicit declaration of function âbam_sort_coreâ; did you mean âbam_format1_coreâ? [-Werror=implicit-function-declaration]	confirmed, ftbfs, help, patch
libbio-scf-perl (1) Homepage: https://metacpan.org/release/Bio-SCF Vcs Debian Perl Group
1047210	libbio-scf-perl: Fails to build source after successful build	ftbfs, sid, trixie
libbpp-core (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1062230	libbpp-core: NMU diff for 64-bit time_t transition	patch
libbpp-phyl (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1062234	libbpp-phyl: NMU diff for 64-bit time_t transition	patch
libbpp-phyl-omics (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1062232	libbpp-phyl-omics: NMU diff for 64-bit time_t transition	patch
libbpp-popgen (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1062236	libbpp-popgen: NMU diff for 64-bit time_t transition	patch
libbpp-qt (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1062237	libbpp-qt: NMU diff for 64-bit time_t transition	patch
libbpp-raa (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1062238	libbpp-raa: NMU diff for 64-bit time_t transition	patch, sid, trixie
libbpp-seq (2) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1062240	libbpp-seq: NMU diff for 64-bit time_t transition	patch
1067586	Drop hard-coded dependency on libbpp-core4	patch
libbpp-seq-omics (1) Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Vcs Debian Med Packaging Team
1062239	libbpp-seq-omics: NMU diff for 64-bit time_t transition	patch
libgkarrays (1) Homepage: http://crac.gforge.inria.fr/gkarrays/ Vcs Debian Med Packaging Team
1062316	libgkarrays: NMU diff for 64-bit time_t transition	patch, sid, trixie
libmaus2 (1) Homepage: https://gitlab.com/german.tischler/libmaus2 Vcs Debian Med Packaging Team
1068573	libmaus2: fix error caused by sysconf function
libmems (1) Homepage: http://sourceforge.net/p/mauve/code/HEAD/tree/libMems/trunk/ Vcs Debian Med Packaging Team
1062416	libmems: NMU diff for 64-bit time_t transition	patch, sid, trixie
libpsortb (1) Homepage: https://www.psort.org/ Vcs Debian Med Packaging Team
1066475	libpsortb: FTBFS: debug_funcs.c:320:38: error: implicit declaration of function âget_mtx_indexâ [-Werror=implicit-function-declaration]	ftbfs, sid, trixie
libpwiz (1) Homepage: http://proteowizard.sourceforge.net/downloads.shtml Vcs The Debichem Group
1062580	libpwiz: NMU diff for 64-bit time_t transition	patch, sid, trixie
librcsb-core-wrapper (1) Homepage: https://sw-tools.rcsb.org/apps/CORE-WRAPPER/index.html Vcs Debian Med Packaging Team
1062602	librcsb-core-wrapper: NMU diff for 64-bit time_t transition	patch, sid, trixie
librostlab (1) Homepage: https://rostlab.org/ Vcs Debian Med Packaging Team
1062612	librostlab: NMU diff for 64-bit time_t transition	patch
libsbml (2) Homepage: http://www.sbml.org/ Vcs Debian Med Packaging Team
1062619	libsbml: NMU diff for 64-bit time_t transition	patch
1068105	drop the Python3-Version attribute	ftbfs, patch, sid, trixie
libslow5lib (1) Homepage: https://github.com/hasindu2008/slow5lib Vcs Debian Med Packaging Team
1063136	libslow5lib: NMU diff for 64-bit time_t transition	patch, sid, trixie
libtabixpp (1) Homepage: https://github.com/ekg/tabixpp Vcs Debian Med Packaging Team
1063137	libtabixpp: NMU diff for 64-bit time_t transition	patch, sid, trixie
libtfbs-perl (1) Homepage: http://tfbs.genereg.net Vcs Debian Med Packaging Team
1066716	libtfbs-perl: FTBFS: ./lib/pwm_searchPFF.c:55:7: error: implicit declaration of function âannounceâ [-Werror=implicit-function-declaration]	ftbfs, sid, trixie
libvbz-hdf-plugin (1) Homepage: https://github.com/nanoporetech/vbz_compression/ Vcs Debian Med Packaging Team
1062695	libvbz-hdf-plugin: NMU diff for 64-bit time_t transition	patch, sid, trixie
libwfa2 (2) Homepage: https://github.com/smarco/WFA2-lib Vcs Debian Med Packaging Team
1045603	libwfa2: Fails to build source after successful build	ftbfs, sid, trixie
1062731	libwfa2: NMU diff for 64-bit time_t transition	patch, sid, trixie
minimap2 (1) Homepage: https://github.com/lh3/minimap2 Vcs Debian Med Packaging Team
1046060	minimap2: Fails to build source after successful build	ftbfs, sid, trixie
ncbi-tools6 (1) Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Vcs Debian Med Packaging Team
1064245	ncbi-tools6: NMU diff for 64-bit time_t transition	patch, sid, trixie
networkx (1) Homepage: https://networkx.github.io/ Vcs Debian OpenStack
1064503	Please pacakge new upstream release 3.2.1
openmm (1) Homepage: https://simtk.org/projects/openmm Vcs Debichem Team
1063095	openmm: NMU diff for 64-bit time_t transition	patch, sid, trixie
python-anndata (1) Homepage: https://github.com/theislab/anndata Vcs Debian Med Packaging Team
1044072	python-anndata: FTBFS with pandas 2.0	sid, trixie
python-bx (1) Homepage: https://github.com/bxlab/bx-python Vcs Debian Med Packaging Team
1068996	python3-bx: maf_word_frequency.py fails to run
python-dnaio (1) Homepage: https://github.com/marcelm/dnaio Vcs Debian Med Packaging Team
1067759	python-dnaio ftbfs on s390x	ftbfs, sid, trixie
python-gffutils (1) Homepage: https://daler.github.io/gffutils Vcs Debian Med Packaging Team
1063974	python-gffutils: autopkgtest regression with pytest 8
python-pyflow (1) Homepage: https://illumina.github.io/pyflow/ Vcs Debian Med Packaging Team
1054591	python3-pyflow: ${VERSION} not expanded in package metadata, causing PEP-440 validation failures
pytorch (3) Homepage: https://pytorch.org/ Vcs Debian Deep Learning Team
994423	pytorch: Baseline violation on armhf	bookworm, bullseye, experimental, ftbfs, sid, trixie
1050175	Missing symbol when importing torch	sid, trixie
1060097	pytorch: FBFS: /<<PKGBUILDDIR>>/aten/src/ATen/native/quantized/cpu/qlinear_prepack.cpp:249:103: error: cannot convert âdnnl::memory::data_typeâ to âconst ideep::dims&â {aka âconst std::vector<long int>&â}	ftbfs
r-bioc-annotationhub (1) Homepage: https://bioconductor.org/packages/AnnotationHub/ Vcs Debian R Packages Maintainers
1034852	r-bioc-annotationhub: autopkgtest regression: download failed	bookworm-ignore
r-bioc-biomart (1) Homepage: https://bioconductor.org/packages/biomaRt/ Vcs Debian R Packages Maintainers
1039501	r-bioc-biomart: autopkgtest regression: Failure ('test_ensembl_ssl_settings.R:71')
r-bioc-structuralvariantannotation (1) Homepage: https://bioconductor.org/packages/StructuralVariantAnnotation/ Vcs Debian R Packages Maintainers
1025045	r-bioc-structuralvariantannotation: Test failures in autopkgtest	bookworm-ignore, upstream
r-cran-future.apply (1) Homepage: https://cran.r-project.org/package=future.apply Vcs Debian R Packages Maintainers
1063431	src:r-cran-future.apply: fails to migrate to testing for too long: autopkgtest failure	sid, trixie, upstream
sbmltoolbox (1) Homepage: http://sbml.org/Software/SBMLToolbox Vcs Debian Med Packaging Team
1069296	sbmltoolbox: Depends on pre-t64 libsbml5
snakemake (1) Homepage: https://snakemake.readthedocs.io/ Vcs Debian Med Packaging Team
1068010	snakemake: Please replace python3-appdirs dependency with platformdirs	sid, trixie
sra-sdk (2) Homepage: https://github.com/ncbi/sra-tools/ Vcs Debian Med Packaging Team
1040391	sra-toolkit: broken symlink: /usr/lib/debian-med/bin/kget -> ../../../bin/vdb-get
1065961	sra-sdk: Please drop dependencies on python3-distutils	ftbfs
staden-io-lib (1) Homepage: https://github.com/jkbonfield/io_lib Vcs Debian Med Packaging Team
1063189	staden-io-lib: NMU diff for 64-bit time_t transition	patch, sid, trixie

^*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:

critical	10
grave	10
serious	10
important	5
normal	3
minor	1
wishlist	0