Summary

Bugs of task bio-ngs

Total bugs: 7

Open bugs: 2

Fixed bugs: 5

Links to other tasks

Tasks overview

Biology 174 (1504)

Biology development 86 (911)

Next generation sequencing 2 (45)

Phylogeny 7 (30)

Cloud 28 (245)

Content management 0 (0)

Covid-19 172 (1677)

Medical data 0 (0)

Dental 2 (18)

Epidemiology 17 (223)

Hospital information systems 0 (0)

Imaging 198 (859)

Imaging development 85 (622)

Laboratory 0 (0)

Oncology 0 (0)

Pharmacology 1 (30)

Physics 26 (180)

Practice 7 (60)

Psychology 13 (84)

Rehabilitation 0 (0)

Research 0 (0)

Statistics 8 (12)

Tools 35 (242)

Typesetting 71 (612)

Legend

Severity	Dependent	Suggested
critical	0	0
grave	0	0
serious	1	0
important	1	0
normal	0	0
minor	0	0
wishlist	0	0

Summary bugs page of task Next generation sequencing

Consider looking into bugs of this task^*

Open bugs in dependent packages

1 serious, 1 important

htslib (1) Homepage: https://github.com/samtools/htslib Vcs Debian Med Packaging Team
1131493	htslib: CVE-2026-31962 CVE-2026-31963 CVE-2026-31964 CVE-2026-31965 CVE-2026-31966 CVE-2026-31967 CVE-2026-31968 CVE-2026-31969 CVE-2026-31970 CVE-2026-31971	security, upstream
sra-sdk (1) Homepage: https://github.com/ncbi/sra-tools/ Vcs Debian Med Packaging Team
1144917	sra-sdk: autopkgtest regression: Segmentation fault

Open bugs in suggested packages

Done bugs

bcftools (1) Homepage: https://samtools.github.io/bcftools/ Vcs Debian Med Packaging Team
1144268	Remove depends on sse2-support (baseline now)
bedtools (1) Homepage: https://github.com/arq5x/bedtools2 Vcs Debian Med Packaging Team
1105730	bedtools: FTBFS with make --shuffle=random: src/utils/version/version.cpp:2:10: fatal error: version_git.h: No such file or directory	forky, ftbfs, sid, trixie
htslib (1) Homepage: https://github.com/samtools/htslib Vcs Debian Med Packaging Team
1148751	htslib 1.24-2: dpkg-gensymbols failure on 12 arches â missing (arch=...) qualifier	sid
last-align (1) Homepage: https://gitlab.com/mcfrith/last Vcs Debian Med Packaging Team
1048396	last-align: Fails to build source after successful build	forky, ftbfs, sid, trixie
velvet (1) Homepage: https://github.com/dzerbino/velvet Vcs Debian Med Packaging Team
1105569	velvet: FTBFS with make --shuffle=reverse: Fatal error: can't create obj/autoOpen.o: No such file or directory	forky, ftbfs, sid, trixie

^*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:

critical	10
grave	10
serious	10
important	5
normal	3
minor	1
wishlist	0