Summary
Bugs of task
bio
Total bugs:
296
Open bugs:
227
Fixed bugs:
69
Links to other tasks
Legend
Severity | Dependent | Suggested |
critical |
0 |
0 |
grave |
0 |
1 |
serious |
21 |
9 |
important |
25 |
13 |
normal |
36 |
17 |
minor |
76 |
5 |
wishlist |
18 |
6 |
|
Summary bugs page of task Biology
Immediately looking into bugs of the dependencies of this task is advised (1778)*
Open bugs in dependent packages
21 serious, 25 important, 36 normal, 76 minor, 18 wishlist
|
920282 |
abyss fails to build on hurd - googletest EXPECT_DEATH |
|
|
1066334 |
acedb: FTBFS: acein.c:2045:15: error: implicit declaration of function âadd_historyâ [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1067631 |
src:altree: autopkgtest timeouts on armel, armhf and ppc64el |
|
|
1066300 |
ampliconnoise: FTBFS: FCluster.c:230:13: error: implicit declaration of function âUpdateMinCacheForRowâ; did you mean âUpdateMinCacheForMarkedRowsâ? [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1012893 |
anfo: ftbfs with GCC-12 |
bookworm, ftbfs, help, sid, trixie |
1061888 |
anfo: NMU diff for 64-bit time_t transition |
patch |
|
1035113 |
arden: please add autopkgtests (to add coverage for python3-numpy) |
|
1036488 |
arden: please add autopkgtests (to add coverage for python3-matplotlib) |
|
|
1043995 |
baitfisher: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1040385 |
libball1.5-data: broken symlink: /usr/share/BALL-1.5/BALLView/html -> ../../doc/libball1.5-data/BALLView/html |
|
1060741 |
ball: Please port from sip4 to sip6 |
help |
|
865130 |
reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz' |
ftbfs, upstream |
|
870060 |
bcftools FTBFS on big endian: 107 tests failed |
ftbfs, upstream |
|
1043686 |
beads: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1032034 |
beagle: broken package on non arm64/amd64 architectures |
wontfix |
1043854 |
beagle: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1025830 |
beauti2 fails to start |
help |
|
1025424 |
beast-mcmc: please enable autopkgtest |
help |
1043640 |
beast-mcmc: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1058469 |
bioxtasraw: please (temporarily) drop python3-numba dependencies |
|
|
1035121 |
bitseq: please add autopkgtests (to add coverage for python3-numpy) |
|
|
1067374 |
blasr: FTBFS: ./obj-x86_64-linux-gnu/../extrautils/StoreQualityByContextFromCmpH5.cpp:40: multiple definition of `main'; toAfg.p/utils_ToAfg.cpp.o:./obj-x86_64-linux-gnu/../utils/ToAfg.cpp:30: first defined here |
ftbfs, sid, trixie |
|
1022772 |
btllib: fails to build on 32-bit archs |
wontfix |
1032358 |
btllib: Depends on libsdsl-dev, breaking installability when not needed |
patch, pending |
1058455 |
btllib: add build support for loongarch64 |
patch |
|
1032036 |
chromhmm: broken package on non arm64/amd64 architectures |
wontfix |
|
1043897 |
cif-tools: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1043837 |
concavity: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1035182 |
cutesv: please add autopkgtests (to add coverage for python3-numpy) |
|
|
982869 |
datamash FTBFS on !x86 32bit: FAIL: tests/decorate-errors |
ftbfs, upstream |
1044977 |
datamash: Fails to build source after successful build |
ftbfs, sid, trixie |
1057439 |
datamash: "antimode" returns lowest, instead of least common, value |
|
|
903886 |
dawg: Test suite fails |
upstream |
|
1045047 |
dssp: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1044706 |
dwgsim: Fails to build source after successful build |
ftbfs, sid, trixie |
1049717 |
dwgsim: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
862118 |
ea-utils: New upstream version available |
|
|
682042 |
emboss-data: ships bulky taxonomy and gene ontology data |
|
986043 |
emboss: uses media types that are not registered |
|
|
1066386 |
examl: FTBFS: quartets.c:393:31: error: implicit declaration of function âbasenameâ; did you mean ârenameâ? [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1044536 |
fasta3: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1066709 |
fastdnaml: FTBFS: fastDNAml.h:228:28: error: implicit declaration of function âfreeâ [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1044647 |
fermi-lite: Fails to build source after successful build |
ftbfs, sid, trixie |
1049564 |
fermi-lite: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
1067271 |
freebayes: FTBFS: dh_auto_test: error: cd build && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=8 meson test -v --timeout-multiplier 100 returned exit code 5 |
ftbfs |
|
1049797 |
freecontact: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
750139 |
gamgi: Conflicting return types of function gamgi_engine_iarray_push |
upstream |
967366 |
gamgi: depends on deprecated GTK 2 |
|
1044244 |
gamgi: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1044308 |
garli: Fails to build source after successful build |
ftbfs, sid, trixie |
|
715937 |
[Mayhem] Bug report on garlic: garlic crashes with exit status 139 |
|
749656 |
garlic: Conflicting declarations of function BlurMainWindow_ to cause undefined behaviour |
|
|
929564 |
gatb-core-testdata: broken symlink: /usr/share/doc/gatb-core/test/gatb-core-cppunit -> ../../../../lib/gatb-core/gatb-core-cppunit |
|
983926 |
gatb-core: ftbfs with -march=x86-64-v2 |
|
|
1039206 |
gbrowse: ships sysv-init script without systemd unit |
|
|
967379 |
gdpc: depends on deprecated GTK 2 |
wontfix |
982103 |
gdpc: autopkgtest failure on s390x |
|
|
1044789 |
gemma: Fails to build source after successful build |
ftbfs, sid, trixie |
|
732691 |
Pressing "alignment or Ctrl+G" only results in a dialog with a cancel button |
upstream |
|
967392 |
ghemical: depends on deprecated GTK 2 |
|
967865 |
ghemical: depends on deprecated libglade2 |
|
996006 |
ghemical: Segmentation fault when starting |
|
1066986 |
ghemical: FTBFS: /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/13/../../../x86_64-linux-gnu/libghemical.so: undefined reference to `sc::RenderedBallMolecule::RenderedBallMolecule(sc::Ref<sc::KeyVal> const&)' |
ftbfs, sid, trixie |
|
1045023 |
grabix: Fails to build source after successful build |
ftbfs, sid, trixie |
|
644397 |
Provide runtime detection for CPU SIMD capabilities |
upstream |
983942 |
gromacs: ftbfs with -march=x86-64-v3 |
|
|
1058474 |
gubbins: please (temporarily) drop python3-numba dependencies |
wontfix |
|
1044305 |
gwama: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1053499 |
hilive: flaky autopkgtest on several archs: segfault |
upstream |
|
958244 |
Use system libinih-dev |
|
986193 |
hinge: no autopkgtest available yet |
newcomer |
1035178 |
hinge: please add autopkgtests (to add coverage for python3-numpy) |
|
1036500 |
hinge: please add autopkgtests (to add coverage for python3-matplotlib) |
|
|
1048028 |
hisat2: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1032975 |
igdiscover -- Broken, unusable package due to incomplete code in the binary package |
|
|
1045517 |
infernal: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1045547 |
ipig: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1021557 |
jellyfish: Performance regression in 2.3.0 (orders of magnitude for some inputs) |
upstream |
|
875328 |
jellyfish1: FTBFS: __sync_val_compare_and_swap_8 undefined |
upstream, wontfix |
1045535 |
jellyfish1: Fails to build source after successful build |
ftbfs, sid, trixie |
|
872418 |
jmol: Weblinks in Help do not work |
|
|
1047324 |
kallisto: Fails to build source after successful build |
ftbfs, sid, trixie |
1057131 |
kallisto: add support for loongarch64 in d/control |
patch, pending |
|
1009159 |
kmerresistance: Add autopkgtest |
newcomer |
|
1048396 |
last-align: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1015505 |
libncl: ftbfs with LTO (link time optimization) enabled |
sid, trixie |
|
1045341 |
librg-utils-perl: Fails to build source after successful build |
ftbfs, sid, trixie |
1049488 |
librg-utils-perl: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
1015525 |
libssw: ftbfs with LTO (link time optimization) enabled |
experimental, sid, trixie |
|
967603 |
ltrsift: depends on deprecated GTK 2 |
upstream, wontfix |
1048669 |
ltrsift: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1047978 |
lumpy-sv: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1048586 |
macsyfinder: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1045227 |
massxpert: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1048833 |
melting: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1035175 |
metaphlan: please add autopkgtests (to add coverage for python3-numpy) |
|
|
1035188 |
microbegps: please add autopkgtests (to add coverage for python3-numpy) |
|
|
1066532 |
microbiomeutil: FTBFS: NAST-iEr.c:106:15: error: implicit declaration of function âisprintâ [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1064769 |
minexpert2: FTBFS: unsatisfiable build-dependencies: libpappsomspp-dev (>= 0.9.24), libpappsomspp-widget-dev (>= 0.9.24) |
ftbfs, sid, trixie |
|
1066525 |
mlv-smile: FTBFS: src/allocateurs.c:45:39: error: implicit declaration of function âgetpagesizeâ [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1048555 |
mptp: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1065908 |
multiqc: Please drop dependencies on python3-distutils |
pending |
|
1045898 |
nanook: Fails to build source after successful build |
ftbfs, sid, trixie |
|
891197 |
Please switch to pcre2 |
sid, trixie |
956850 |
ncbi-blast+: Please provide /usr/bin/legacy_blast.pl |
|
984871 |
ncbi-blast+: Missing headers for shared libraries |
|
1010110 |
ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception' |
wontfix |
|
1048966 |
ncbi-igblast: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1066563 |
ncbi-seg: FTBFS: genwin.c:93:8: error: implicit declaration of function âblastdbâ [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
225651 |
ncbi-tools-x11: want Cn3D++ |
|
|
1049529 |
norsnet: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
1025370 |
ntcard: ftbfs with nthash 2.3.0 |
ftbfs, upstream |
|
1045354 |
nxtrim: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1047870 |
obitools: Fails to build source after successful build |
ftbfs, sid, trixie |
1066369 |
obitools: FTBFS: build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_readindex.c:6320:3: error: implicit declaration of function âheapsortâ [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1047303 |
plast: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1048822 |
plink2: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1047456 |
porechop: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1009156 |
pplacer: Add autopkgtest |
|
1024889 |
pplacer: build-depends on dropped package |
|
|
1066653 |
prime-phylo: FTBFS: gb.tab.c:1096:16: error: implicit declaration of function âyylexâ [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1045454 |
primer3: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1046067 |
proalign: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1042769 |
provean: incompatible with cd-hit >= 4.8.1-4 |
sid, trixie |
|
1048520 |
psortb: Fails to build source after successful build |
ftbfs, sid, trixie |
|
602610 |
Package freemol.mengine for full modeling capabilities |
|
709306 |
pymol: Crashes when running within xrdp/vnc (no 3D support) |
|
765794 |
Race condition when running scripts in "stdin" mode |
|
783653 |
pymol: Segmentation fault immediately after loading pdb |
|
|
1058479 |
python-cogent: please (temporarily) drop python3-numba dependencies |
wontfix |
|
1036374 |
[INTL:es] Spanish translation of qcumber debconf template |
l10n, patch |
1036506 |
qcumber: please add autopkgtests (to add coverage for python3-matplotlib) |
|
1049117 |
qcumber: Fails to build source after successful build |
ftbfs, sid, trixie |
|
642084 |
qutemol: Cannot start the program |
|
939033 |
qutemol: Uses GifQuantizeBuffer - stops working with newer giflib |
|
|
1047092 |
rambo-k: Fails to build source after successful build |
ftbfs, sid, trixie |
|
909766 |
Use Debian packaged spdlog instead of code copy of old version |
help, upstream |
976588 |
rapmap: FTBFS on arm64 (when trying to build arch:all) |
bookworm, bullseye, ftbfs, sid, trixie |
|
1045461 |
reapr: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1045897 |
reprof: Fails to build source after successful build |
ftbfs, sid, trixie |
1049597 |
reprof: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
1047005 |
roary: Fails to build source after successful build |
ftbfs, sid, trixie |
1049576 |
roary: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
1015654 |
sambamba: ftbfs with LTO (link time optimization) enabled |
sid, trixie |
|
1048084 |
scythe: Fails to build source after successful build |
ftbfs, sid, trixie |
|
917851 |
seqan2 2.4.0+dfsg-9: FTBFS, alignment problem |
ftbfs |
1047218 |
seqan2: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1049489 |
seqprep: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
967743 |
seqtools: depends on deprecated GTK 2 |
|
1047310 |
seqtools: Fails to build source after successful build |
ftbfs, sid, trixie |
|
848589 |
snap-aligner: Build requires 188 GB of memory (fortunately not used, just allocated) |
|
|
1046827 |
snpsift: Fails to build source after successful build |
ftbfs, pending, sid, trixie |
|
1047125 |
sprai: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1040391 |
sra-toolkit: broken symlink: /usr/lib/debian-med/bin/kget -> ../../../bin/vdb-get |
|
1053411 |
sra-sdk: FTBFS with re2 >= 20230601 (which requires abseil) |
upstream |
1065961 |
sra-sdk: Please drop dependencies on python3-distutils |
ftbfs |
|
1049300 |
subread: Fails to build source after successful build |
ftbfs, pending, sid, trixie |
|
1048111 |
surankco: Fails to build source after successful build |
ftbfs, sid, trixie |
|
956848 |
t-coffee: should use "example" blastpgp.pl |
|
|
1066499 |
thesias: FTBFS: src/thesiaslib.c:57:13: error: implicit declaration of function âthesiasRunâ [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1049071 |
tombo: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1045986 |
tortoize: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1049170 |
tree-puzzle: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1046737 |
treeview: Fails to build source after successful build |
ftbfs, sid, trixie |
|
846481 |
src:treeviewx: Please remove statically linked code copy of libncl |
|
|
981874 |
trinityrnaseq: flaky autopkgtest |
bookworm, bullseye, sid, trixie |
|
1047488 |
twopaco: Fails to build source after successful build |
ftbfs, sid, trixie |
|
980509 |
umap-learn: Binary package name should be python3-umap-learn |
pending |
1058489 |
umap-learn: please (temporarily) drop python3-numba dependencies |
|
|
1048635 |
unicycler: Fails to build source after successful build |
ftbfs, sid, trixie |
|
976511 |
vg: FTBFS on arm64: configure: error: Could not find a version of the library! |
bookworm, bullseye, ftbfs, sid, trixie |
987184 |
vg -- excessive variants built, and not tested |
|
1013061 |
vg: ftbfs with GCC-12 |
bookworm, ftbfs, sid, trixie |
1015699 |
vg: ftbfs with LTO (link time optimization) enabled |
sid, trixie |
1043312 |
vg: Replace transitional bsdmainutils |
|
|
1066004 |
virulencefinder: Please drop dependencies on python3-distutils |
|
Open bugs in suggested packages
1 grave, 9 serious, 13 important, 17 normal, 5 minor, 6 wishlist
|
916406 |
libarb-dev: Missing symbols in static libraries |
|
|
928076 |
bcbio: Workflows not ready for non-developers to depend on. |
|
1018312 |
bcbio: build-depends on python3-nose or uses it for autopkgtest |
|
|
1066956 |
blimps: FTBFS with -Werror=implicit-function-declaration |
ftbfs, sid, trixie |
|
1030327 |
science-numericalcomputation: please stop recommending python3-theano as it is being removed |
|
1032638 |
please drop transitional package science-electronics from src:debian-science |
|
1055339 |
debian-science: please replace recommendation of src:dolfin by src:fenics-dolfinx |
|
|
995966 |
epigrass: epirunner and epidash fail to run due to missing dash modules |
pending |
998265 |
epigrass: autopkgtest regression: The 'panel' distribution was not found |
|
1057989 |
epigrass: runtime dependency on cython |
sid, trixie |
1058470 |
epigrass: please (temporarily) drop python3-numba dependencies |
|
|
638753 |
libhdf5-serial-1.8.7: threadsafe memory leaks |
moreinfo |
715959 |
[Mayhem] Bug report on hdf5-tools: gif2h5 crashes with exit status 139 |
|
716008 |
[Mayhem] Bug report on hdf5-tools: h5copy crashes with exit status 139 |
|
716010 |
[Mayhem] Bug report on hdf5-tools: h5diff crashes with exit status 139 |
|
716011 |
[Mayhem] Bug report on hdf5-tools: h5dump crashes with exit status 139 |
|
716012 |
[Mayhem] Bug report on hdf5-tools: h5import crashes with exit status 139 |
|
740613 |
libhdf5-7: Please include support for compression with libaec |
|
748587 |
Duplicate and conflicting definitions of variable FILENAME |
upstream |
839784 |
libhdf5-dev: pkg-config file references ONLY the C library |
|
915807 |
hdf5: CVE-2017-17507 |
security, upstream |
958174 |
hdf5: please add the hdf5plugins |
|
968559 |
libhdf5-openmpi-dev: hdf5-mpi.pc alternative sometimes goes missing |
moreinfo |
1023446 |
libhdf5-openmpi-dev: h5pcc configured as static build |
|
1023820 |
hdf5: Dependencies not tight enough |
|
1031726 |
hdf5: CVE-2022-26061 CVE-2022-25972 CVE-2022-25942 |
security, upstream |
1034807 |
hdf5: CVE-2018-11205 |
security, upstream |
1034838 |
hdf5: CVE-2019-8396 CVE-2019-8398 |
security |
1040862 |
hdf5: S3 VFD pulls in networking dependencies (libcurl), please package it as a VFD plugin |
|
1052250 |
pkg-config file incorrect for static linking |
|
1063856 |
hdf5: new upstream release |
|
1065331 |
libhdf5-103-1t64: depends on libcurl4 instead of libcurl4t64 |
|
1067758 |
Please provide a nojava build profile |
|
1067789 |
hdf5: diff for NMU version 1.10.10+repack-3.2 |
patch, pending |
|
1063953 |
intake: autopkgtest regression with pytest 8 |
|
1064752 |
intake: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.11" returned exit code 13 |
ftbfs, sid, trixie |
|
1047039 |
pyrle: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1044072 |
python-anndata: FTBFS with pandas 2.0 |
sid, trixie |
|
1058482 |
python-loompy: please (temporarily) drop python3-numba dependencies |
|
|
1046648 |
python-ncls: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1035277 |
python-seqcluster: please add autopkgtests (to add coverage for python3-numpy) |
|
|
1066085 |
q2cli: please make the build reproducible |
patch, pending |
|
1065945 |
q2-emperor: Please drop dependencies on python3-distutils |
|
|
1065946 |
q2-sample-classifier: Please drop dependencies on python3-distutils |
|
|
1065333 |
q2-types: test data heavily outweighs actual code |
|
|
1036681 |
relion-cuda: FTBFS with CUDA 12: nvcc fatal : Value 'sm_35' is not defined for option 'gpu-architecture' |
ftbfs, sid, trixie |
1040128 |
relion-cuda: FTBFS with cub 2.0.1: error: function "cub::Debug" has already been defined |
ftbfs, sid, trixie |
|
1049268 |
resfinder-db: Fails to build source after successful build |
ftbfs, sid, trixie |
|
986200 |
sift: Please provide autopkgtest |
newcomer |
987606 |
sift: does not autobuild on buildds |
|
1066998 |
sift: FTBFS with -Werror=implicit-function-declaration |
ftbfs, sid, trixie |
Done bugs
|
1056087 |
bali-phy: FTBFS: boost1.83 transition |
experimental, ftbfs, sid, trixie |
|
1065834 |
bedops: Please drop dependencies on python3-distutils |
ftbfs, sid, trixie |
|
1043674 |
biosyntax: Fails to build source after successful build |
ftbfs, sid, trixie |
1049738 |
biosyntax: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
1066326 |
codonw: FTBFS: codonW.h:38:74: error: implicit declaration of function âgetsâ; did you mean âfgetsâ? [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1066534 |
daligner: FTBFS: ONElib.c:1792:29: error: implicit declaration of function âvasprintfâ; did you mean âvsprintfâ? [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1066663 |
dazzdb: FTBFS: ONElib.c:1793:29: error: implicit declaration of function âvasprintfâ; did you mean âvsprintfâ? [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1066659 |
dialign: FTBFS: input.c:65:5: error: implicit declaration of function âerreurâ [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1066559 |
dialign-t: FTBFS: museq.c:168:9: error: implicit declaration of function âfree_diagâ; did you mean âfree_diag_colâ? [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1061344 |
emboss-lib: identified for time_t transition but no ABI in shlibs |
sid, trixie |
|
1044407 |
emboss-explorer: Fails to build source after successful build |
ftbfs, sid, trixie |
1049733 |
emboss-explorer: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
1062588 |
ffindex: NMU diff for 64-bit time_t transition |
patch, sid, trixie |
|
1062403 |
freecontact: NMU diff for 64-bit time_t transition |
patch, sid, trixie |
|
1062071 |
genometools: NMU diff for 64-bit time_t transition |
patch |
|
1033703 |
gffread: autopkgtest regression: test dependency not in testing |
bookworm-ignore |
|
1062427 |
ghmm: NMU diff for 64-bit time_t transition |
patch, sid, trixie |
1065974 |
ghmm: FTBFS on arm{el,hf}: mcmc.c:144:3: error: implicit declaration of function âinit_priorsâ [-Werror=implicit-function-declaration] |
ftbfs |
|
972537 |
please add --enable-ros3-vfd to the build options to allow RO access to HDF5 on S3 |
|
1064095 |
hdf5: NMU diff for 64-bit time_t transition |
patch, sid, trixie |
|
1046065 |
hmmer2: Fails to build source after successful build |
ftbfs, sid, trixie |
1049476 |
hmmer2: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
1066436 |
hmmer2: FTBFS: ld: cannot find -lhmmer: No such file or directory |
ftbfs, sid, trixie |
|
1062344 |
htslib: NMU diff for 64-bit time_t transition |
patch |
|
1049535 |
igor: Fails to build binary packages again after successful build |
ftbfs, sid, trixie |
|
1065646 |
igv fails to build from source due to tests trying to access the internet |
|
|
1064157 |
jellyfish: NMU diff for 64-bit time_t transition |
patch, sid, trixie |
|
1065889 |
kleborate: Please drop dependencies on python3-distutils |
|
|
1066580 |
lagan: FTBFS: order.c:409:5: error: implicit declaration of function âprintMFAAlignâ; did you mean âprintBinAlignâ? [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1061806 |
lamassemble fails its autopkg tests with Python 3.12 |
ftbfs, sid, trixie |
|
1062580 |
libpwiz: NMU diff for 64-bit time_t transition |
patch, sid, trixie |
|
1047296 |
lucy: Fails to build source after successful build |
ftbfs, sid, trixie |
1066324 |
lucy: FTBFS: poly.c:22:9: error: implicit declaration of function âabi_codeâ [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1062681 |
macromoleculebuilder: NMU diff for 64-bit time_t transition |
patch, sid, trixie |
|
1047612 |
macs: Fails to build source after successful build |
ftbfs, sid, trixie |
1056813 |
macs: ftbfs with cython 3.0.x |
patch, sid, trixie, upstream |
1057991 |
macs: runtime dependency on cython |
sid, trixie |
|
1046060 |
minimap2: Fails to build source after successful build |
ftbfs, sid, trixie |
|
1063589 |
multiqc fails autopkg tests with Python 3.12 |
ftbfs, sid, trixie |
|
1064245 |
ncbi-tools6: NMU diff for 64-bit time_t transition |
patch, sid, trixie |
1066356 |
ncbi-tools6: FTBFS: asn2gnb2.c:3409:14: error: implicit declaration of function âPrintDateâ [-Werror=implicit-function-declaration] |
ftbfs |
|
964082 |
parsinsert fails it's tests when built with -O2 |
bookworm, bullseye, sid, trixie |
|
1066451 |
phast: FTBFS: ./src/lib/phylo/./src/lib/phylo/phast_subst_mods.c:532:(.text+0xead7): undefined reference to `die' |
ftbfs, sid, trixie |
|
1066595 |
phylip: FTBFS: drawgram.c:2111:9: error: implicit declaration of function âmakeboxâ [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1066633 |
poa: FTBFS: fasta_format.c:48:9: error: implicit declaration of function âstringptr_cat_posâ; did you mean âstringptr_catâ? [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1066472 |
pullseq: FTBFS: pull_by_re.c:76:29: error: implicit declaration of function âsearch_headerâ [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1044064 |
pyranges: FTBFS with pandas 2.0 |
help, sid, trixie |
|
1063974 |
python-gffutils: autopkgtest regression with pytest 8 |
|
|
1044056 |
python-nanoget: test failure with pandas 2.0 |
sid, trixie |
|
1054591 |
python3-pyflow: ${VERSION} not expanded in package metadata, causing PEP-440 validation failures |
|
|
1034852 |
r-bioc-annotationhub: autopkgtest regression: download failed |
bookworm-ignore |
|
1033853 |
r-bioc-megadepth: autopkgtest regression: different output |
bookworm-ignore |
|
1025045 |
r-bioc-structuralvariantannotation: Test failures in autopkgtest |
bookworm-ignore, upstream |
|
1066478 |
readseq: FTBFS: readseq.c:801:5: error: implicit declaration of function âgetsâ; did you mean âfgetsâ? [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1066541 |
repeatmasker-recon: FTBFS: seqlist.h:39:16: error: implicit declaration of function âisspaceâ [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1048377 |
seqan-needle: Fails to build source after successful build |
ftbfs, sid, trixie |
1063430 |
src:seqan-needle: fails to migrate to testing for too long: FTBFS on amd64 and arm64 |
ftbfs, sid, trixie |
|
1066772 |
seqmagick: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.11" returned exit code 13 |
ftbfs, sid, trixie |
|
1066363 |
seqprep: FTBFS: SeqPrep.c:166:15: error: implicit declaration of function âgetoptâ [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
1062891 |
seqtools: NMU diff for 64-bit time_t transition |
patch, sid, trixie |
|
1065800 |
sigma-align: FTBFS on arm{el,hf}: getopt_long.c:295:25: error: implicit declaration of function âwarnxâ [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|
976523 |
spades: FTBFS: jemalloc_internal.h:292:6: error: #error "No LG_QUANTUM definition for architecture; specify via CPPFLAGS" |
bookworm, bullseye, ftbfs, sid, trixie |
|
1015667 |
spoa: ftbfs with LTO (link time optimization) enabled |
experimental, sid, trixie |
|
1066508 |
staden: FTBFS: capture.c:33:14: error: implicit declaration of function âmkostempâ; did you mean âmkstempâ? [-Werror=implicit-function-declaration] |
experimental, ftbfs, sid, trixie |
|
1063189 |
staden-io-lib: NMU diff for 64-bit time_t transition |
patch, sid, trixie |
|
1058654 |
toil: python3-boto is being removed from the archive |
upstream |
1061852 |
toil fails its autopkg tests with Python 3.12 |
ftbfs, sid, trixie |
1065987 |
toil: Please drop dependencies on python3-distutils |
ftbfs |
|
1066705 |
wise: FTBFS: prior.c:102:12: error: implicit declaration of function âstrcmpâ [-Werror=implicit-function-declaration] |
ftbfs, sid, trixie |
|