Debian Med Project
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Summary
Bugs of task bio
Total bugs: 296
Open bugs: 227
Fixed bugs: 69
Links to other tasks
Biology 227 (1778)
Phylogeny 11 (90)
Cloud 43 (450)
Covid-19 148 (1344)
Medical data 1 (1)
Dental 1 (3)
Epidemiology 9 (125)
Imaging 207 (933)
Laboratory 1 (9)
Oncology 1 (3)
Pharmacology 1 (9)
Physics 24 (159)
Practice 6 (33)
Psychology 6 (46)
Research 0 (0)
Statistics 3 (7)
Tools 38 (241)
Typesetting 63 (508)
Legend
SeverityDependentSuggested
critical 0 0
grave 0 1
serious 21 9
important 25 13
normal 36 17
minor 76 5
wishlist 18 6

Summary bugs page of task Biology

Immediately looking into bugs of the dependencies of this task is advised (1778)*

Open bugs in dependent packages

21 serious, 25 important, 36 normal, 76 minor, 18 wishlist
920282 abyss fails to build on hurd - googletest EXPECT_DEATH
1066334 acedb: FTBFS: acein.c:2045:15: error: implicit declaration of function ‘add_history’ [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1067631 src:altree: autopkgtest timeouts on armel, armhf and ppc64el
1066300 ampliconnoise: FTBFS: FCluster.c:230:13: error: implicit declaration of function ‘UpdateMinCacheForRow’; did you mean ‘UpdateMinCacheForMarkedRows’? [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1012893 anfo: ftbfs with GCC-12 bookworm, ftbfs, help, sid, trixie
1061888 anfo: NMU diff for 64-bit time_t transition patch
1035113 arden: please add autopkgtests (to add coverage for python3-numpy)
1036488 arden: please add autopkgtests (to add coverage for python3-matplotlib)
1043995 baitfisher: Fails to build source after successful build ftbfs, sid, trixie
1040385 libball1.5-data: broken symlink: /usr/share/BALL-1.5/BALLView/html -> ../../doc/libball1.5-data/BALLView/html
1060741 ball: Please port from sip4 to sip6 help
865130 reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz' ftbfs, upstream
870060 bcftools FTBFS on big endian: 107 tests failed ftbfs, upstream
1043686 beads: Fails to build source after successful build ftbfs, sid, trixie
1032034 beagle: broken package on non arm64/amd64 architectures wontfix
1043854 beagle: Fails to build source after successful build ftbfs, sid, trixie
1025830 beauti2 fails to start help
1025424 beast-mcmc: please enable autopkgtest help
1043640 beast-mcmc: Fails to build source after successful build ftbfs, sid, trixie
1058469 bioxtasraw: please (temporarily) drop python3-numba dependencies
1035121 bitseq: please add autopkgtests (to add coverage for python3-numpy)
1067374 blasr: FTBFS: ./obj-x86_64-linux-gnu/../extrautils/StoreQualityByContextFromCmpH5.cpp:40: multiple definition of `main'; toAfg.p/utils_ToAfg.cpp.o:./obj-x86_64-linux-gnu/../utils/ToAfg.cpp:30: first defined here ftbfs, sid, trixie
1022772 btllib: fails to build on 32-bit archs wontfix
1032358 btllib: Depends on libsdsl-dev, breaking installability when not needed patch, pending
1058455 btllib: add build support for loongarch64 patch
1032036 chromhmm: broken package on non arm64/amd64 architectures wontfix
1043897 cif-tools: Fails to build source after successful build ftbfs, sid, trixie
1043837 concavity: Fails to build source after successful build ftbfs, sid, trixie
1035182 cutesv: please add autopkgtests (to add coverage for python3-numpy)
982869 datamash FTBFS on !x86 32bit: FAIL: tests/decorate-errors ftbfs, upstream
1044977 datamash: Fails to build source after successful build ftbfs, sid, trixie
1057439 datamash: "antimode" returns lowest, instead of least common, value
903886 dawg: Test suite fails upstream
1045047 dssp: Fails to build source after successful build ftbfs, sid, trixie
1044706 dwgsim: Fails to build source after successful build ftbfs, sid, trixie
1049717 dwgsim: Fails to build binary packages again after successful build ftbfs, sid, trixie
862118 ea-utils: New upstream version available
682042 emboss-data: ships bulky taxonomy and gene ontology data
986043 emboss: uses media types that are not registered
1066386 examl: FTBFS: quartets.c:393:31: error: implicit declaration of function ‘basename’; did you mean ‘rename’? [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1044536 fasta3: Fails to build source after successful build ftbfs, sid, trixie
1066709 fastdnaml: FTBFS: fastDNAml.h:228:28: error: implicit declaration of function ‘free’ [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1044647 fermi-lite: Fails to build source after successful build ftbfs, sid, trixie
1049564 fermi-lite: Fails to build binary packages again after successful build ftbfs, sid, trixie
1067271 freebayes: FTBFS: dh_auto_test: error: cd build && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=8 meson test -v --timeout-multiplier 100 returned exit code 5 ftbfs
1049797 freecontact: Fails to build binary packages again after successful build ftbfs, sid, trixie
750139 gamgi: Conflicting return types of function gamgi_engine_iarray_push upstream
967366 gamgi: depends on deprecated GTK 2
1044244 gamgi: Fails to build source after successful build ftbfs, sid, trixie
1044308 garli: Fails to build source after successful build ftbfs, sid, trixie
715937 [Mayhem] Bug report on garlic: garlic crashes with exit status 139
749656 garlic: Conflicting declarations of function BlurMainWindow_ to cause undefined behaviour
929564 gatb-core-testdata: broken symlink: /usr/share/doc/gatb-core/test/gatb-core-cppunit -> ../../../../lib/gatb-core/gatb-core-cppunit
983926 gatb-core: ftbfs with -march=x86-64-v2
1039206 gbrowse: ships sysv-init script without systemd unit
967379 gdpc: depends on deprecated GTK 2 wontfix
982103 gdpc: autopkgtest failure on s390x
1044789 gemma: Fails to build source after successful build ftbfs, sid, trixie
732691 Pressing "alignment or Ctrl+G" only results in a dialog with a cancel button upstream
967392 ghemical: depends on deprecated GTK 2
967865 ghemical: depends on deprecated libglade2
996006 ghemical: Segmentation fault when starting
1066986 ghemical: FTBFS: /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/13/../../../x86_64-linux-gnu/libghemical.so: undefined reference to `sc::RenderedBallMolecule::RenderedBallMolecule(sc::Ref<sc::KeyVal> const&)' ftbfs, sid, trixie
1045023 grabix: Fails to build source after successful build ftbfs, sid, trixie
644397 Provide runtime detection for CPU SIMD capabilities upstream
983942 gromacs: ftbfs with -march=x86-64-v3
1058474 gubbins: please (temporarily) drop python3-numba dependencies wontfix
1044305 gwama: Fails to build source after successful build ftbfs, sid, trixie
1053499 hilive: flaky autopkgtest on several archs: segfault upstream
958244 Use system libinih-dev
986193 hinge: no autopkgtest available yet newcomer
1035178 hinge: please add autopkgtests (to add coverage for python3-numpy)
1036500 hinge: please add autopkgtests (to add coverage for python3-matplotlib)
1048028 hisat2: Fails to build source after successful build ftbfs, sid, trixie
1032975 igdiscover -- Broken, unusable package due to incomplete code in the binary package
1045517 infernal: Fails to build source after successful build ftbfs, sid, trixie
1045547 ipig: Fails to build source after successful build ftbfs, sid, trixie
1021557 jellyfish: Performance regression in 2.3.0 (orders of magnitude for some inputs) upstream
875328 jellyfish1: FTBFS: __sync_val_compare_and_swap_8 undefined upstream, wontfix
1045535 jellyfish1: Fails to build source after successful build ftbfs, sid, trixie
872418 jmol: Weblinks in Help do not work
1047324 kallisto: Fails to build source after successful build ftbfs, sid, trixie
1057131 kallisto: add support for loongarch64 in d/control patch, pending
1009159 kmerresistance: Add autopkgtest newcomer
1048396 last-align: Fails to build source after successful build ftbfs, sid, trixie
1015505 libncl: ftbfs with LTO (link time optimization) enabled sid, trixie
1045341 librg-utils-perl: Fails to build source after successful build ftbfs, sid, trixie
1049488 librg-utils-perl: Fails to build binary packages again after successful build ftbfs, sid, trixie
1015525 libssw: ftbfs with LTO (link time optimization) enabled experimental, sid, trixie
967603 ltrsift: depends on deprecated GTK 2 upstream, wontfix
1048669 ltrsift: Fails to build source after successful build ftbfs, sid, trixie
1047978 lumpy-sv: Fails to build source after successful build ftbfs, sid, trixie
1048586 macsyfinder: Fails to build source after successful build ftbfs, sid, trixie
1045227 massxpert: Fails to build source after successful build ftbfs, sid, trixie
1048833 melting: Fails to build source after successful build ftbfs, sid, trixie
1035175 metaphlan: please add autopkgtests (to add coverage for python3-numpy)
1035188 microbegps: please add autopkgtests (to add coverage for python3-numpy)
1066532 microbiomeutil: FTBFS: NAST-iEr.c:106:15: error: implicit declaration of function ‘isprint’ [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1064769 minexpert2: FTBFS: unsatisfiable build-dependencies: libpappsomspp-dev (>= 0.9.24), libpappsomspp-widget-dev (>= 0.9.24) ftbfs, sid, trixie
1066525 mlv-smile: FTBFS: src/allocateurs.c:45:39: error: implicit declaration of function ‘getpagesize’ [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1048555 mptp: Fails to build source after successful build ftbfs, sid, trixie
1065908 multiqc: Please drop dependencies on python3-distutils pending
1045898 nanook: Fails to build source after successful build ftbfs, sid, trixie
891197 Please switch to pcre2 sid, trixie
956850 ncbi-blast+: Please provide /usr/bin/legacy_blast.pl
984871 ncbi-blast+: Missing headers for shared libraries
1010110 ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception' wontfix
1048966 ncbi-igblast: Fails to build source after successful build ftbfs, sid, trixie
1066563 ncbi-seg: FTBFS: genwin.c:93:8: error: implicit declaration of function ‘blastdb’ [-Werror=implicit-function-declaration] ftbfs, sid, trixie
225651 ncbi-tools-x11: want Cn3D++
1049529 norsnet: Fails to build binary packages again after successful build ftbfs, sid, trixie
1025370 ntcard: ftbfs with nthash 2.3.0 ftbfs, upstream
1045354 nxtrim: Fails to build source after successful build ftbfs, sid, trixie
1047870 obitools: Fails to build source after successful build ftbfs, sid, trixie
1066369 obitools: FTBFS: build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_readindex.c:6320:3: error: implicit declaration of function ‘heapsort’ [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1047303 plast: Fails to build source after successful build ftbfs, sid, trixie
1048822 plink2: Fails to build source after successful build ftbfs, sid, trixie
1047456 porechop: Fails to build source after successful build ftbfs, sid, trixie
1009156 pplacer: Add autopkgtest
1024889 pplacer: build-depends on dropped package
1066653 prime-phylo: FTBFS: gb.tab.c:1096:16: error: implicit declaration of function ‘yylex’ [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1045454 primer3: Fails to build source after successful build ftbfs, sid, trixie
1046067 proalign: Fails to build source after successful build ftbfs, sid, trixie
1042769 provean: incompatible with cd-hit >= 4.8.1-4 sid, trixie
1048520 psortb: Fails to build source after successful build ftbfs, sid, trixie
602610 Package freemol.mengine for full modeling capabilities
709306 pymol: Crashes when running within xrdp/vnc (no 3D support)
765794 Race condition when running scripts in "stdin" mode
783653 pymol: Segmentation fault immediately after loading pdb
1058479 python-cogent: please (temporarily) drop python3-numba dependencies wontfix
1036374 [INTL:es] Spanish translation of qcumber debconf template l10n, patch
1036506 qcumber: please add autopkgtests (to add coverage for python3-matplotlib)
1049117 qcumber: Fails to build source after successful build ftbfs, sid, trixie
642084 qutemol: Cannot start the program
939033 qutemol: Uses GifQuantizeBuffer - stops working with newer giflib
1047092 rambo-k: Fails to build source after successful build ftbfs, sid, trixie
909766 Use Debian packaged spdlog instead of code copy of old version help, upstream
976588 rapmap: FTBFS on arm64 (when trying to build arch:all) bookworm, bullseye, ftbfs, sid, trixie
1045461 reapr: Fails to build source after successful build ftbfs, sid, trixie
1045897 reprof: Fails to build source after successful build ftbfs, sid, trixie
1049597 reprof: Fails to build binary packages again after successful build ftbfs, sid, trixie
1047005 roary: Fails to build source after successful build ftbfs, sid, trixie
1049576 roary: Fails to build binary packages again after successful build ftbfs, sid, trixie
1015654 sambamba: ftbfs with LTO (link time optimization) enabled sid, trixie
1048084 scythe: Fails to build source after successful build ftbfs, sid, trixie
917851 seqan2 2.4.0+dfsg-9: FTBFS, alignment problem ftbfs
1047218 seqan2: Fails to build source after successful build ftbfs, sid, trixie
1049489 seqprep: Fails to build binary packages again after successful build ftbfs, sid, trixie
967743 seqtools: depends on deprecated GTK 2
1047310 seqtools: Fails to build source after successful build ftbfs, sid, trixie
848589 snap-aligner: Build requires 188 GB of memory (fortunately not used, just allocated)
1046827 snpsift: Fails to build source after successful build ftbfs, pending, sid, trixie
1047125 sprai: Fails to build source after successful build ftbfs, sid, trixie
1040391 sra-toolkit: broken symlink: /usr/lib/debian-med/bin/kget -> ../../../bin/vdb-get
1053411 sra-sdk: FTBFS with re2 >= 20230601 (which requires abseil) upstream
1065961 sra-sdk: Please drop dependencies on python3-distutils ftbfs
1049300 subread: Fails to build source after successful build ftbfs, pending, sid, trixie
1048111 surankco: Fails to build source after successful build ftbfs, sid, trixie
956848 t-coffee: should use "example" blastpgp.pl
1066499 thesias: FTBFS: src/thesiaslib.c:57:13: error: implicit declaration of function ‘thesiasRun’ [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1049071 tombo: Fails to build source after successful build ftbfs, sid, trixie
1045986 tortoize: Fails to build source after successful build ftbfs, sid, trixie
1049170 tree-puzzle: Fails to build source after successful build ftbfs, sid, trixie
1046737 treeview: Fails to build source after successful build ftbfs, sid, trixie
846481 src:treeviewx: Please remove statically linked code copy of libncl
981874 trinityrnaseq: flaky autopkgtest bookworm, bullseye, sid, trixie
1047488 twopaco: Fails to build source after successful build ftbfs, sid, trixie
980509 umap-learn: Binary package name should be python3-umap-learn pending
1058489 umap-learn: please (temporarily) drop python3-numba dependencies
1048635 unicycler: Fails to build source after successful build ftbfs, sid, trixie
976511 vg: FTBFS on arm64: configure: error: Could not find a version of the library! bookworm, bullseye, ftbfs, sid, trixie
987184 vg -- excessive variants built, and not tested
1013061 vg: ftbfs with GCC-12 bookworm, ftbfs, sid, trixie
1015699 vg: ftbfs with LTO (link time optimization) enabled sid, trixie
1043312 vg: Replace transitional bsdmainutils
1066004 virulencefinder: Please drop dependencies on python3-distutils

Open bugs in suggested packages

1 grave, 9 serious, 13 important, 17 normal, 5 minor, 6 wishlist
916406 libarb-dev: Missing symbols in static libraries
928076 bcbio: Workflows not ready for non-developers to depend on.
1018312 bcbio: build-depends on python3-nose or uses it for autopkgtest
1066956 blimps: FTBFS with -Werror=implicit-function-declaration ftbfs, sid, trixie
1030327 science-numericalcomputation: please stop recommending python3-theano as it is being removed
1032638 please drop transitional package science-electronics from src:debian-science
1055339 debian-science: please replace recommendation of src:dolfin by src:fenics-dolfinx
995966 epigrass: epirunner and epidash fail to run due to missing dash modules pending
998265 epigrass: autopkgtest regression: The 'panel' distribution was not found
1057989 epigrass: runtime dependency on cython sid, trixie
1058470 epigrass: please (temporarily) drop python3-numba dependencies
638753 libhdf5-serial-1.8.7: threadsafe memory leaks moreinfo
715959 [Mayhem] Bug report on hdf5-tools: gif2h5 crashes with exit status 139
716008 [Mayhem] Bug report on hdf5-tools: h5copy crashes with exit status 139
716010 [Mayhem] Bug report on hdf5-tools: h5diff crashes with exit status 139
716011 [Mayhem] Bug report on hdf5-tools: h5dump crashes with exit status 139
716012 [Mayhem] Bug report on hdf5-tools: h5import crashes with exit status 139
740613 libhdf5-7: Please include support for compression with libaec
748587 Duplicate and conflicting definitions of variable FILENAME upstream
839784 libhdf5-dev: pkg-config file references ONLY the C library
915807 hdf5: CVE-2017-17507 security, upstream
958174 hdf5: please add the hdf5plugins
968559 libhdf5-openmpi-dev: hdf5-mpi.pc alternative sometimes goes missing moreinfo
1023446 libhdf5-openmpi-dev: h5pcc configured as static build
1023820 hdf5: Dependencies not tight enough
1031726 hdf5: CVE-2022-26061 CVE-2022-25972 CVE-2022-25942 security, upstream
1034807 hdf5: CVE-2018-11205 security, upstream
1034838 hdf5: CVE-2019-8396 CVE-2019-8398 security
1040862 hdf5: S3 VFD pulls in networking dependencies (libcurl), please package it as a VFD plugin
1052250 pkg-config file incorrect for static linking
1063856 hdf5: new upstream release
1065331 libhdf5-103-1t64: depends on libcurl4 instead of libcurl4t64
1067758 Please provide a nojava build profile
1067789 hdf5: diff for NMU version 1.10.10+repack-3.2 patch, pending
1063953 intake: autopkgtest regression with pytest 8
1064752 intake: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.11" returned exit code 13 ftbfs, sid, trixie
1047039 pyrle: Fails to build source after successful build ftbfs, sid, trixie
1044072 python-anndata: FTBFS with pandas 2.0 sid, trixie
1058482 python-loompy: please (temporarily) drop python3-numba dependencies
1046648 python-ncls: Fails to build source after successful build ftbfs, sid, trixie
1035277 python-seqcluster: please add autopkgtests (to add coverage for python3-numpy)
1066085 q2cli: please make the build reproducible patch, pending
1065945 q2-emperor: Please drop dependencies on python3-distutils
1065946 q2-sample-classifier: Please drop dependencies on python3-distutils
1065333 q2-types: test data heavily outweighs actual code
1036681 relion-cuda: FTBFS with CUDA 12: nvcc fatal : Value 'sm_35' is not defined for option 'gpu-architecture' ftbfs, sid, trixie
1040128 relion-cuda: FTBFS with cub 2.0.1: error: function "cub::Debug" has already been defined ftbfs, sid, trixie
1049268 resfinder-db: Fails to build source after successful build ftbfs, sid, trixie
986200 sift: Please provide autopkgtest newcomer
987606 sift: does not autobuild on buildds
1066998 sift: FTBFS with -Werror=implicit-function-declaration ftbfs, sid, trixie

Done bugs

1056087 bali-phy: FTBFS: boost1.83 transition experimental, ftbfs, sid, trixie
1065834 bedops: Please drop dependencies on python3-distutils ftbfs, sid, trixie
1043674 biosyntax: Fails to build source after successful build ftbfs, sid, trixie
1049738 biosyntax: Fails to build binary packages again after successful build ftbfs, sid, trixie
1066326 codonw: FTBFS: codonW.h:38:74: error: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1066534 daligner: FTBFS: ONElib.c:1792:29: error: implicit declaration of function ‘vasprintf’; did you mean ‘vsprintf’? [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1066663 dazzdb: FTBFS: ONElib.c:1793:29: error: implicit declaration of function ‘vasprintf’; did you mean ‘vsprintf’? [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1066659 dialign: FTBFS: input.c:65:5: error: implicit declaration of function ‘erreur’ [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1066559 dialign-t: FTBFS: museq.c:168:9: error: implicit declaration of function ‘free_diag’; did you mean ‘free_diag_col’? [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1061344 emboss-lib: identified for time_t transition but no ABI in shlibs sid, trixie
1044407 emboss-explorer: Fails to build source after successful build ftbfs, sid, trixie
1049733 emboss-explorer: Fails to build binary packages again after successful build ftbfs, sid, trixie
1062588 ffindex: NMU diff for 64-bit time_t transition patch, sid, trixie
1062403 freecontact: NMU diff for 64-bit time_t transition patch, sid, trixie
1062071 genometools: NMU diff for 64-bit time_t transition patch
1033703 gffread: autopkgtest regression: test dependency not in testing bookworm-ignore
1062427 ghmm: NMU diff for 64-bit time_t transition patch, sid, trixie
1065974 ghmm: FTBFS on arm{el,hf}: mcmc.c:144:3: error: implicit declaration of function ‘init_priors’ [-Werror=implicit-function-declaration] ftbfs
972537 please add --enable-ros3-vfd to the build options to allow RO access to HDF5 on S3
1064095 hdf5: NMU diff for 64-bit time_t transition patch, sid, trixie
1046065 hmmer2: Fails to build source after successful build ftbfs, sid, trixie
1049476 hmmer2: Fails to build binary packages again after successful build ftbfs, sid, trixie
1066436 hmmer2: FTBFS: ld: cannot find -lhmmer: No such file or directory ftbfs, sid, trixie
1062344 htslib: NMU diff for 64-bit time_t transition patch
1049535 igor: Fails to build binary packages again after successful build ftbfs, sid, trixie
1065646 igv fails to build from source due to tests trying to access the internet
1064157 jellyfish: NMU diff for 64-bit time_t transition patch, sid, trixie
1065889 kleborate: Please drop dependencies on python3-distutils
1066580 lagan: FTBFS: order.c:409:5: error: implicit declaration of function ‘printMFAAlign’; did you mean ‘printBinAlign’? [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1061806 lamassemble fails its autopkg tests with Python 3.12 ftbfs, sid, trixie
1062580 libpwiz: NMU diff for 64-bit time_t transition patch, sid, trixie
1047296 lucy: Fails to build source after successful build ftbfs, sid, trixie
1066324 lucy: FTBFS: poly.c:22:9: error: implicit declaration of function ‘abi_code’ [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1062681 macromoleculebuilder: NMU diff for 64-bit time_t transition patch, sid, trixie
1047612 macs: Fails to build source after successful build ftbfs, sid, trixie
1056813 macs: ftbfs with cython 3.0.x patch, sid, trixie, upstream
1057991 macs: runtime dependency on cython sid, trixie
1046060 minimap2: Fails to build source after successful build ftbfs, sid, trixie
1063589 multiqc fails autopkg tests with Python 3.12 ftbfs, sid, trixie
1064245 ncbi-tools6: NMU diff for 64-bit time_t transition patch, sid, trixie
1066356 ncbi-tools6: FTBFS: asn2gnb2.c:3409:14: error: implicit declaration of function ‘PrintDate’ [-Werror=implicit-function-declaration] ftbfs
964082 parsinsert fails it's tests when built with -O2 bookworm, bullseye, sid, trixie
1066451 phast: FTBFS: ./src/lib/phylo/./src/lib/phylo/phast_subst_mods.c:532:(.text+0xead7): undefined reference to `die' ftbfs, sid, trixie
1066595 phylip: FTBFS: drawgram.c:2111:9: error: implicit declaration of function ‘makebox’ [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1066633 poa: FTBFS: fasta_format.c:48:9: error: implicit declaration of function ‘stringptr_cat_pos’; did you mean ‘stringptr_cat’? [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1066472 pullseq: FTBFS: pull_by_re.c:76:29: error: implicit declaration of function ‘search_header’ [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1044064 pyranges: FTBFS with pandas 2.0 help, sid, trixie
1063974 python-gffutils: autopkgtest regression with pytest 8
1044056 python-nanoget: test failure with pandas 2.0 sid, trixie
1054591 python3-pyflow: ${VERSION} not expanded in package metadata, causing PEP-440 validation failures
1034852 r-bioc-annotationhub: autopkgtest regression: download failed bookworm-ignore
1033853 r-bioc-megadepth: autopkgtest regression: different output bookworm-ignore
1025045 r-bioc-structuralvariantannotation: Test failures in autopkgtest bookworm-ignore, upstream
1066478 readseq: FTBFS: readseq.c:801:5: error: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1066541 repeatmasker-recon: FTBFS: seqlist.h:39:16: error: implicit declaration of function ‘isspace’ [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1048377 seqan-needle: Fails to build source after successful build ftbfs, sid, trixie
1063430 src:seqan-needle: fails to migrate to testing for too long: FTBFS on amd64 and arm64 ftbfs, sid, trixie
1066772 seqmagick: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.11" returned exit code 13 ftbfs, sid, trixie
1066363 seqprep: FTBFS: SeqPrep.c:166:15: error: implicit declaration of function ‘getopt’ [-Werror=implicit-function-declaration] ftbfs, sid, trixie
1062891 seqtools: NMU diff for 64-bit time_t transition patch, sid, trixie
1065800 sigma-align: FTBFS on arm{el,hf}: getopt_long.c:295:25: error: implicit declaration of function ‘warnx’ [-Werror=implicit-function-declaration] ftbfs, sid, trixie
976523 spades: FTBFS: jemalloc_internal.h:292:6: error: #error "No LG_QUANTUM definition for architecture; specify via CPPFLAGS" bookworm, bullseye, ftbfs, sid, trixie
1015667 spoa: ftbfs with LTO (link time optimization) enabled experimental, sid, trixie
1066508 staden: FTBFS: capture.c:33:14: error: implicit declaration of function ‘mkostemp’; did you mean ‘mkstemp’? [-Werror=implicit-function-declaration] experimental, ftbfs, sid, trixie
1063189 staden-io-lib: NMU diff for 64-bit time_t transition patch, sid, trixie
1058654 toil: python3-boto is being removed from the archive upstream
1061852 toil fails its autopkg tests with Python 3.12 ftbfs, sid, trixie
1065987 toil: Please drop dependencies on python3-distutils ftbfs
1066705 wise: FTBFS: prior.c:102:12: error: implicit declaration of function ‘strcmp’ [-Werror=implicit-function-declaration] ftbfs, sid, trixie
*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:
critical10
grave10
serious10
important5
normal3
minor1
wishlist0
Last update: Thu, 28 Mar 2024 18:19:32 -0000