Summary
Imaging Development
Debian Med image processing and visualization packages development
This metapackage will install Debian packages which might be useful
for developing applications for medical image processing and
visualization.
Description
For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:
If you discover a project which looks like a good candidate for Debian Med
to you, or if you have prepared an unofficial Debian package, please do not hesitate to
send a description of that project to the Debian Med mailing list
Links to other tasks
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Debian Med Imaging Development packages
Official Debian packages with high relevance
cimg-dev
powerful image processing library
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Versions of package cimg-dev |
Release | Version | Architectures |
trixie | 3.2.1+dfsg-1 | all |
stretch-security | 1.7.9+dfsg-1+deb9u2 | all |
jessie | 1.5.9+dfsg-1 | all |
jessie-security | 1.5.9+dfsg-1+deb8u1 | all |
sid | 3.2.1+dfsg-1 | all |
stretch | 1.7.9+dfsg-1 | all |
bullseye | 2.9.4+dfsg-2 | all |
bookworm | 3.2.1+dfsg-1 | all |
buster | 2.4.5+dfsg-1+deb10u1 | all |
upstream | 3.4.1 |
Debtags of package cimg-dev: |
devel | library |
role | devel-lib |
works-with | image, image:raster |
x11 | library |
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License: DFSG free
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The CImg Library is a C++ toolkit providing simple classes and functions
to load, save, process and display images in your own C++ code. It consists
only of a single header file CImg.h that must be included in your program
source. It contains useful image processing algorithms for loading/saving,
resizing/rotating, filtering, object drawing (text, lines, faces,
ellipses, ...), etc.
Images are instantiated by a class able to represent images up to 4-dimension
wide (from 1-D scalar signals to 3-D volumes of vector-valued pixels), with
template pixel types. It depends on a minimal number of libraries : you can
compile it with only standard C libraries. No need for exotic libraries and
complex dependencies.
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ctn-dev
Pliki dla deweloperów programu Central Test Node w implementacji DICOM
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Versions of package ctn-dev |
Release | Version | Architectures |
buster | 3.2.0~dfsg-6 | amd64,arm64,armhf,i386 |
jessie | 3.2.0~dfsg-2 | amd64,armel,armhf,i386 |
sid | 3.2.0~dfsg-8 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 3.2.0~dfsg-8 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 3.2.0~dfsg-7 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 3.2.0~dfsg-7 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
stretch | 3.2.0~dfsg-5 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
Debtags of package ctn-dev: |
devel | library |
field | medicine:imaging |
role | devel-lib |
works-with | db, image, image:raster |
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License: DFSG free
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DICOM jest standardem do przechowywania, dodawania adnotacji oraz
wymiany w sieci. Jest szeroko stosowany w medycynie.
Pakiet zawiera pliki nagłówkowe oraz statyczne biblioteki używane przy
tworzeniu (pisaniu) programów, które używają bibliotek programu Central
Test Node (CTN).
Please cite:
S.M. Moore, S.A. Hoffman and D.E. Beecher:
DICOM Shareware: A Public Implementation of the DICOM Standard
2165:772–781
(1994)
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gmic
GREYC's Magic for Image Computing
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Versions of package gmic |
Release | Version | Architectures |
bookworm | 2.9.4-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
sid | 2.9.4-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 2.9.4-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 2.9.4-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x |
jessie | 1.6.0.1-1 | amd64,armel,armhf,i386 |
buster | 2.4.5-1 | amd64,arm64,armhf,i386 |
stretch | 1.7.9+zart-4 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
upstream | 3.4.1 |
Debtags of package gmic: |
interface | commandline |
role | program |
works-with | image |
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License: DFSG free
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G'MIC is an open and full-featured framework for image processing,
providing several different user interfaces to
convert/manipulate/filter/visualize generic image datasets, from 1d
scalar signals to 3d+t sequences of multi-spectral volumetric images.
This package contains the stand-alone gmic binary.
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libbart-dev
Pliki dla programistów platformy BART
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Versions of package libbart-dev |
Release | Version | Architectures |
bookworm | 0.8.00-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 0.4.04-2 | amd64,arm64,armhf,i386 |
sid | 0.9.00-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 0.9.00-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 0.6.00-3+deb11u1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
stretch | 0.4.00-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
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License: DFSG free
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Berkeley Advanced Reconstruction Toolbox (BART) to wolna od opłat,
otwartoźródłowa platforma rekonstruowania obrazu, służąca do obrazowania
metodą komputerowego rezonansu magnetycznego.
Pakiet zawiera pliki nagłówkowe i biblioteki statyczne.
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libbiosig-dev
I/O library for biomedical data - development files
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Versions of package libbiosig-dev |
Release | Version | Architectures |
buster | 1.9.3-2 | amd64,arm64,armhf,i386 |
bookworm | 2.5.0-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
jessie | 1.3.0-2 | amd64,armel,armhf,i386 |
bullseye | 2.1.2-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
stretch | 1.3.0-2.2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
trixie | 2.6.1-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 2.6.1-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
Debtags of package libbiosig-dev: |
devel | examples, library |
role | devel-lib |
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License: DFSG free
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BioSig is a library for accessing files in several biomedical data formats
(including EDF, BDF, GDF, BrainVision, BCI2000, CFWB, HL7aECG,
SCP_ECG (EN1064), MFER, ACQ, CNT(Neuroscan), DEMG, EGI, EEG1100,
FAMOS, SigmaPLpro, TMS32). The complete list of supported file
formats is available at http://pub.ist.ac.at/~schloegl/biosig/TESTED .
This package provides header files and static library.
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libcamitk-dev
Computer Assisted Medical Intervention Tool Kit - development
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Versions of package libcamitk-dev |
Release | Version | Architectures |
trixie | 5.2.0-2 | amd64 |
stretch | 4.0.4-2 | amd64,i386 |
bullseye | 4.1.2-4 | amd64,i386 |
buster | 4.1.2-3 | amd64,i386 |
sid | 5.2.0-2 | amd64 |
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License: DFSG free
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Helps researchers and clinicians to easily and rapidly collaborate in
order to prototype CAMI applications, that feature medical images,
surgical navigation and biomechanical simulations.
This package contains development files needed to build CamiTK applications.
This package also provides the CamiTK wizard application to create new
extensions.
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libcifti-dev
development files for CiftiLib
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Versions of package libcifti-dev |
Release | Version | Architectures |
bookworm | 1.6.0-2 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 1.6.0-2 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 1.6.0-2.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x |
sid | 1.6.0-2.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
buster | 1.5.1-3 | amd64,arm64,armhf,i386 |
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License: DFSG free
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CIFTI (Connectivity Informatics Technology Initiative) standardizes the file
formats for storage of connectivity data. These formats are developed by the
Human Connectome Project and other interested parties.
CiftiLib is a C++ library for CIFTI-1 and CIFTI-2 file I/O, supporting both
on-disk and in-memory access. It also provides facilities for reading and
writing generic NIfTI-1 and NIfTI-2 files.
This package provides the development files.
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libedf-dev
European Data Format library - devel
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Versions of package libedf-dev |
Release | Version | Architectures |
trixie | 1.26-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64 |
jessie | 1.10-1 | amd64,armel,armhf,i386 |
sid | 1.26-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64 |
bookworm | 1.23-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 1.15-1 | amd64,arm64,armhf,i386 |
bullseye | 1.19-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
stretch | 1.11-2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
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License: DFSG free
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EDFlib is a programming library for C/C++ to read/write EDF+/BDF+
files. (It also reads old-type EDF/BDF files.)
EDF means European Data Format. BDF is the 24-bits version of EDF.
Headers and shared libraries for edflib.
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libgdcm2-dev
Grassroots DICOM development libraries and headers
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Versions of package libgdcm2-dev |
Release | Version | Architectures |
buster | 2.8.8-9 | amd64,arm64,armhf,i386 |
jessie | 2.4.4-3+deb8u1 | amd64,armel,armhf,i386 |
stretch | 2.6.6-3 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
Debtags of package libgdcm2-dev: |
devel | lang:c++, library |
role | devel-lib |
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License: DFSG free
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Grassroots DiCoM is a C++ library for DICOM medical files. It is
automatically wrapped to python/C#/Java (using swig). It supports
RAW,JPEG (lossy/lossless),J2K,JPEG-LS, RLE and deflated.
Headers and static libraries for libgdcm. These are not needed to use
GDCM, but are needed to build plugins or programs that link against
libgdcm.
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libgdf-dev
IO library for the GDF -- development library
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Versions of package libgdf-dev |
Release | Version | Architectures |
trixie | 0.1.3-11.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x |
bookworm | 0.1.3-11 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
sid | 0.1.3-11.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 0.1.3-8 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 0.1.2-2.1 | amd64,arm64,armhf,i386 |
stretch | 0.1.2-2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 0.1.2-2 | amd64,armel,armhf,i386 |
Debtags of package libgdf-dev: |
devel | library |
role | devel-lib |
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License: DFSG free
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GDF (General Dataformat for Biosignals) is intended to provide a generic
storage for biosignals, such as EEG, ECG, MEG etc.
This package provides the header files.
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libgiftiio-dev
IO library for the GIFTI cortical surface data format - headers
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Versions of package libgiftiio-dev |
Release | Version | Architectures |
sid | 1.0.9-6 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 1.0.9-6 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 1.0.9-6 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
jessie | 1.0.9-1 | amd64,armel,armhf,i386 |
stretch | 1.0.9-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
buster | 1.0.9-3 | amd64,arm64,armhf,i386 |
bullseye | 1.0.9-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
Debtags of package libgiftiio-dev: |
devel | library |
role | devel-lib |
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License: DFSG free
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GIFTI is an XML-based file format for cortical surface data. This reference
IO implementation is developed by the Neuroimaging Informatics Technology
Initiative (NIfTI).
This package provides the header files and static library.
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libinsighttoolkit5-dev
Image processing toolkit for registration and segmentation - development
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Versions of package libinsighttoolkit5-dev |
Release | Version | Architectures |
experimental | 5.3.0-9~0exp0 | amd64 |
bookworm | 5.2.1-5 | amd64 |
trixie | 5.3.0-7 | amd64 |
sid | 5.3.0-7 | amd64 |
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License: DFSG free
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ITK is an open-source software toolkit for performing registration and
segmentation. Segmentation is the process of identifying and
classifying data found in a digitally sampled
representation. Typically the sampled representation is an image
acquired from such medical instrumentation as CT or MRI
scanners. Registration is the task of aligning or developing
correspondences between data. For example, in the medical
environment, a CT scan may be aligned with a MRI scan in order to
combine the information contained in both.
This package contains the development files needed to build your own
ITK applications.
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libismrmrd-dev
development files for ISMRMRD
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Versions of package libismrmrd-dev |
Release | Version | Architectures |
bookworm | 1.8.0-2 | amd64,arm64,armel,i386,mips64el,mipsel,ppc64el,s390x |
buster | 1.4.0-1 | amd64,arm64,i386 |
trixie | 1.8.0-2 | amd64,arm64,armel,i386,mips64el,ppc64el,riscv64,s390x |
sid | 1.8.0-2 | amd64,arm64,armel,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 1.4.2.1-6 | amd64,arm64,armel,i386,mips64el,mipsel,ppc64el,s390x |
stretch | 1.3.3-1 | amd64,arm64,armel,i386,mips,mips64el,mipsel,ppc64el,s390x |
upstream | 1.14.1 |
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License: DFSG free
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The ISMRMRD format combines a mix of flexible data structures (XML header)
and fixed structures (equivalent to C-structs) to represent MRI data.
In addition, the ISMRMRD format also specifies an image header for storing
reconstructed images and the accompanying C++ library provides a convenient
way of writing such images into HDF5 files along with generic arrays for
storing less well defined data structures, e.g. coil sensitivity maps or
other calibration data.
This package provides the development files.
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libmaxflow-dev
Development files for the maxflow-mincut algorithm
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Versions of package libmaxflow-dev |
Release | Version | Architectures |
bookworm | 3.0.5-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
sid | 3.0.5-3 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 3.0.5-3 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 3.0.5-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 3.0.5-2 | amd64,arm64,armhf,i386 |
stretch | 3.0.4-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
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License: DFSG free
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This library implements an efficient minimum cut/maximum flow
algorithms on graphs that can be used for exact or approximate
energy minimization in low-level vision. The algorithm provides a high
performance that makes near real-time performance possible.
This package provides the development files for the library.
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libmdc2-dev
??? missing short description for package libmdc2-dev :-(
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Versions of package libmdc2-dev |
Release | Version | Architectures |
jessie | 0.13.0-2 | amd64,armel,armhf,i386 |
stretch | 0.14.1-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
Debtags of package libmdc2-dev: |
devel | library |
role | devel-lib |
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License: DFSG free
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libmia-2.4-dev
library for 2D and 3D gray scale image processing, development files
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Versions of package libmia-2.4-dev |
Release | Version | Architectures |
bullseye | 2.4.7-7 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 2.4.7-11 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
sid | 2.4.7-13 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
buster | 2.4.6-4 | amd64,arm64,armhf,i386 |
stretch | 2.4.3-5 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
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License: DFSG free
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libmia comprises a set of libraries and plug-ins for general purpose
2D and 3D gray scale image processing and basic handling of triangular
meshes. The libraries provide a basic infrastructure and generic
algorithms, that can be specialized by specifying the appropriate plug-ins.
This package provides the development files for the library.
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libmialm-dev
Development files for the MIA landmark library
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Versions of package libmialm-dev |
Release | Version | Architectures |
bookworm | 1.0.9-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
sid | 1.0.9-3.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 1.0.9-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 1.0.9-2 | amd64,arm64,armhf,i386 |
stretch | 1.0.9-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 1.0.8-2 | amd64,armel,armhf,i386 |
trixie | 1.0.9-3.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x |
Debtags of package libmialm-dev: |
devel | library |
role | devel-lib |
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License: DFSG free
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This library implements handling for landmarks and 3D view positioning
for optimal landmark visibility, and in-and output of these landmarks.
This library is part of the MIA tool chain for medical image analysis.
This package contains the development files - headers, shared libraries,
and pkg-config files.
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libminc-dev
MNI medical image format development environment
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Versions of package libminc-dev |
Release | Version | Architectures |
jessie | 2.2.00-6 | amd64,armel,armhf,i386 |
sid | 2.4.06-2.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 2.4.06-2.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x |
bookworm | 2.4.05-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 2.4.03-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 2.4.03-2 | amd64,arm64,armhf,i386 |
stretch | 2.3.00-3.1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
Debtags of package libminc-dev: |
field | medicine, medicine:imaging |
role | devel-lib |
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License: DFSG free
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This package contains the library and headers for libminc2 and
libminc_io.
The Minc file format is a highly flexible medical image file format.
Minc version 1 is built on top of the NetCDF generalized data format.
Minc version 2 is built on top of the HDF data format. This library
handles both formats. In each case the format is
simple, self-describing, extensible, portable and N-dimensional, with
programming interfaces for both low-level data access and high-level
volume manipulation. On top of the libraries is a suite of generic
image-file manipulation tools. The format, libraries and tools are
designed for use in a medical-imaging research environment : they are
simple and powerful and make no attempt to provide a pretty interface
to users.
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libnifti2-dev
IO libraries for the NIfTI-1 data format (development)
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Versions of package libnifti2-dev |
Release | Version | Architectures |
trixie | 3.0.1-9.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 3.0.1-9.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 3.0.1-8 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 3.0.1-9 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
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License: DFSG free
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Niftilib is a set of i/o libraries for reading and writing files in the
NIfTI-1 data format. NIfTI-1 is a binary file format for storing medical
image data, e.g. magnetic resonance image (MRI) and functional MRI (fMRI)
brain images.
This package provides the header files and static libraries of libnifti2.
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libodil-dev
C++11 library for the DICOM standard (development files)
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Versions of package libodil-dev |
Release | Version | Architectures |
bookworm | 0.12.2-2 | amd64,arm64,armel,armhf,i386,mipsel,ppc64el,s390x |
sid | 0.12.2-4.1 | amd64,arm64,armel,armhf,i386,ppc64el,s390x |
trixie | 0.12.2-4.1 | amd64,arm64,armel,armhf,i386,ppc64el,s390x |
bullseye | 0.12.1-1 | amd64,arm64,armel,armhf,i386,mipsel,ppc64el,s390x |
buster | 0.10.0-3 | amd64,arm64,armhf,i386 |
upstream | 0.13.0 |
|
License: DFSG free
|
Odil leverages C++ constructs to provide a user-friendly API of the
different parts of the DICOM standard. Included in Odil are exception-based
error handling, generic access to datasets elements, standard JSON and XML
representation of datasets, and generic implementation of messages, clients
and servers for the various DICOM protocols.
This package contains the development files.
|
|
libopencv-dev
development files for opencv
|
Versions of package libopencv-dev |
Release | Version | Architectures |
bookworm | 4.6.0+dfsg-12 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 4.5.1+dfsg-5 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
jessie | 2.4.9.1+dfsg-1+deb8u1 | amd64,armel,armhf,i386 |
sid | 4.6.0+dfsg-14 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
stretch-security | 2.4.9.1+dfsg1-2+deb9u1 | amd64,arm64,armel,armhf,i386 |
trixie | 4.6.0+dfsg-14 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
stretch | 2.4.9.1+dfsg1-2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie-security | 2.4.9.1+dfsg-1+deb8u2 | amd64,armel,armhf,i386 |
buster | 3.2.0+dfsg-6 | amd64,arm64,armhf,i386 |
upstream | 4.10.0 |
Debtags of package libopencv-dev: |
devel | library |
role | devel-lib |
|
License: DFSG free
|
This is a metapackage providing development package necessary for
development of OpenCV (Open Computer Vision).
The Open Computer Vision Library is a collection of algorithms and sample
code for various computer vision problems. The library is compatible with
IPL (Intel's Image Processing Library) and, if available, can use IPP
(Intel's Integrated Performance Primitives) for better performance.
OpenCV provides low level portable data types and operators, and a set
of high level functionalities for video acquisition, image processing and
analysis, structural analysis, motion analysis and object tracking, object
recognition, camera calibration and 3D reconstruction.
Please cite:
Gary Bradski and Adrian Kaehler:
Learning OpenCV: Computer Vision with the OpenCV Library
(2008)
|
|
libopenigtlink-dev
Open IGT Link is a simple network protocol - development
|
Versions of package libopenigtlink-dev |
Release | Version | Architectures |
bullseye | 1.11.0-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 1.11.0-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 1.11.0-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
jessie | 1.10.5-1 | amd64,armel,armhf,i386 |
sid | 1.11.0-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
stretch | 1.11.0-3 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
buster | 1.11.0-4 | amd64,arm64,armhf,i386 |
upstream | 3.0 |
Debtags of package libopenigtlink-dev: |
devel | library |
role | devel-lib |
|
License: DFSG free
|
Open IGT Link is a simple network protocol intended for trackers,
robots and other devices to send data to the main application.
Some devices might also accept commands.
For example applications may include:
- Stereotactic surgical guidance using optical position sensor and
medical image visualization software.
- Intraoperative image guidance using real-time MRI and medical image
visualization software
- Robot-assisted intervention using robotic device and surgical planning
software
This package contains the development files needed to build
your own IGT applications.
|
|
libopenslide-dev
Development files for the OpenSlide library
|
Versions of package libopenslide-dev |
Release | Version | Architectures |
bullseye | 3.4.1+dfsg-5 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 3.4.1+dfsg-4 | amd64,arm64,armhf,i386 |
jessie | 3.4.0-1 | amd64,armel,armhf,i386 |
stretch | 3.4.1+dfsg-2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
sid | 3.4.1+dfsg-7 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 3.4.1+dfsg-7 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x |
bookworm | 3.4.1+dfsg-6 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
upstream | 4.0.0 |
Debtags of package libopenslide-dev: |
devel | library |
role | devel-lib |
|
License: DFSG free
|
OpenSlide is a C library that provides a simple interface to read whole-slide
images also known as virtual slides.
Whole-slide images, also known as virtual slides, are large, high resolution
images used in digital pathology. Reading these images using standard image
tools or libraries is a challenge because these tools are typically designed
for images that can comfortably be uncompressed into RAM or a swap file.
Whole-slide images routinely exceed RAM sizes, often occupying tens of
gigabytes when uncompressed. Additionally, whole-slide images are typically
multi-resolution, and only a small amount of image data might be needed at a
particular resolution.
This library currently supports:
- Aperio (.svs, .tif)
- Hamamatsu (.vms, .vmu, .ndpi)
- Leica (.scn)
- MIRAX (.mrxs)
- Sakura (.svslide)
- Trestle (.tif)
- Generic tiled TIFF (.tif)
This package contains development files needed to build OpenSlide applications.
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|
libpapyrus3-dev
DICOM compatible file format library
|
Versions of package libpapyrus3-dev |
Release | Version | Architectures |
bookworm | 3.7.1+dfsg-5 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
sid | 3.7.1+dfsg-6 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
jessie | 3.7.1-1 | amd64,armel,armhf,i386 |
stretch | 3.7.1+dfsg-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
buster | 3.7.1+dfsg-3 | amd64,arm64,armhf,i386 |
trixie | 3.7.1+dfsg-6 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 3.7.1+dfsg-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
Debtags of package libpapyrus3-dev: |
devel | library |
role | devel-lib |
|
License: DFSG free
|
PAPYRUS 3.0 file format based on the new DICOM 3.0 Standard addresses the open
interchange of medical images in files or on removable storage media. This
specific implementation of the DICOM standard is intended as a generic solution
for interchange of multi-modality medical images on removable media. It can
also be used for convenient exchange of image data between different computer
systems through industry standard file transfer mechanisms. Finally it can also
be used for storage and archival of medical image data in a DICOM compatible
format.
This package contains the libraries needed to run PAPYRUS 3.0 applications.
|
|
libsight-dev
|
Versions of package libsight-dev |
Release | Version | Architectures |
bookworm | 21.1.1-3 | amd64 |
trixie | 24.1.0-1 | amd64 |
sid | 24.1.0-1 | amd64 |
bullseye | 20.2.0-2 | amd64,i386 |
|
License: DFSG free
|
The Surgical Image Guidance and
Healthcare Toolkit aims to ease the creation of
applications based on medical imaging. It includes
various features such as 2D and 3D digital image
processing, visualization, augmented reality and
medical interaction simulation. It runs on many
different environments (Windows, Linux, macOS), is
written in C++, and features rapid interface design
using XML files.
Sight was formerly known as FW4SPL. It was renamed
in 2018, firstly to make its purpose clearer, and
secondly as part of a major change in design and in
the governance of the development team.
This package contains the development files.
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libteem-dev
Tools to process and visualize scientific data and images - development
|
Versions of package libteem-dev |
Release | Version | Architectures |
sid | 1.12.0~20160122-5 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 1.12.0~20160122-5 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
stretch | 1.11.0~svn6057-1.1 | amd64,armel,armhf,i386,mips,mipsel,s390x |
jessie | 1.11.0~svn5226-1 | amd64,armel,armhf,i386 |
bookworm | 1.12.0~20160122-5 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 1.12.0~20160122-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
Debtags of package libteem-dev: |
devel | library |
role | devel-lib |
|
License: DFSG free
|
Teem is a coordinated group of libraries for representing, processing, and
visualizing scientific raster data. Teem includes command-line tools that
permit the library functions to be quickly applied to files and streams,
without having to write any code. The most important and useful libraries in
Teem are:
- Nrrd (and the unu command-line tool on top of it) supports a range of
operations for transforming N-dimensional raster data (resample, crop,
slice, project, histogram, etc.), as well as the NRRD file format for
storing arrays and their meta-information.
- Gage: fast convolution-based measurements at arbitrary point locations in
volume datasets (scalar, vector, tensor, etc.)
- Mite: a multi-threaded ray-casting volume render with transfer functions
based on any quantity Gage can measure
- Ten: for estimating, processing, and visualizing diffusion tensor fields,
including fiber tractography methods.
This package provides the Teem header files required to compile C++ programs
that use Teem to do 3D visualisation.
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libvigraimpex-dev
development files for the C++ computer vision library
|
Versions of package libvigraimpex-dev |
Release | Version | Architectures |
trixie | 1.11.2+dfsg-3 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 1.11.1+dfsg-8 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 1.11.1+dfsg-11 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 1.10.0+git20160211.167be93+dfsg1-2 | amd64,arm64,armhf,i386 |
stretch | 1.10.0+git20160211.167be93+dfsg-2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 1.9.0+dfsg-10 | amd64,armel,armhf,i386 |
sid | 1.12.1+dfsg-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
Debtags of package libvigraimpex-dev: |
devel | lang:c++, library |
role | devel-lib |
works-with | image, image:raster |
|
License: DFSG free
|
Vision with Generic Algorithms (VIGRA) is a computer vision library
that puts its main emphasis on flexible algorithms, because
algorithms represent the principle know-how of this field. The
library was consequently built using generic programming as
introduced by Stepanov and Musser and exemplified in the C++ Standard
Template Library. By writing a few adapters (image iterators and
accessors) you can use VIGRA's algorithms on top of your data
structures, within your environment.
This package contains the header and development files needed to
build programs and packages using VIGRA.
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libvistaio-dev
Pliki deweloperskie do biblioteki libvistaio
|
Versions of package libvistaio-dev |
Release | Version | Architectures |
buster | 1.2.19-2 | amd64,arm64,armhf,i386 |
bookworm | 1.2.19-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 1.2.19-3 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 1.2.19-3 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
stretch | 1.2.19-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 1.2.16-2 | amd64,armel,armhf,i386 |
bullseye | 1.2.19-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
Debtags of package libvistaio-dev: |
devel | library |
role | devel-lib |
|
License: DFSG free
|
Vistaio jest biblioteką, która obsługuje ładowanie i przechowywanie
danych w sposób wieloplatformowy. Jej zaletą jest to, że w innych
przypadkach pliki binarne zawierają nagłówek ascii, który ułatwia
uzyskanie informacji o zawartości pliku. Obsługuje różne typy danych,
takie jak: obrazy, pola wektorowe i wykresy. Jest to pakiet deweloperski
zawierający pliki nagłówkowe, skrypt pkg-config i strony podręcznika.
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libvolpack1-dev
fast volume rendering library (development package)
|
Versions of package libvolpack1-dev |
Release | Version | Architectures |
stretch | 1.0b3-5 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
trixie | 1.0b3-10 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
buster | 1.0b3-7 | amd64,arm64,armhf,i386 |
bullseye | 1.0b3-9 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
sid | 1.0b3-10 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 1.0b3-9 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
jessie | 1.0b3-5 | amd64,armel,armhf,i386 |
Debtags of package libvolpack1-dev: |
field | medicine:imaging |
role | devel-lib |
|
License: DFSG free
|
VolPack is a software library for fast, high-quality volume rendering with
this features:
- Renders data sampled on a regular, three-dimensional grid.
- Supports user-specified transfer functions for both opacity and color.
- Provides a shading model with directional light sources, multiple material
types with different reflective properties, depth cueing, and shadows.
- Produces color (24 bits/pixel) or grayscale (8 bits/pixel) renderings,
with or without an alpha channel.
- Supports arbitrary affine view transformations.
- Supports a flexible data format that allows an arbitrary C structure to be
associated with each voxel.
This is the development package.
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libvtk-dicom-dev
DICOM dla VTK - pliki dla deweloperów
|
Versions of package libvtk-dicom-dev |
Release | Version | Architectures |
sid | 0.8.14-3.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
buster | 0.8.9-1 | amd64,arm64,armhf,i386 |
bullseye | 0.8.12-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 0.8.14-3.1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
stretch | 0.7.10-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
experimental | 0.8.14-3.2~exp1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
upstream | 0.8.16 |
|
License: DFSG free
|
Pakiet zawiera zestaw klas do zarządzania plikami i metadanymi DICOM
z poziomu VTK, oraz niektóre narzędzia do odpytywania i konwertowania
plików DICOM.
Pakiet zawiera pliki dla deweloperów.
|
|
libvtk9-dev
|
Versions of package libvtk9-dev |
Release | Version | Architectures |
sid | 9.3.0+dfsg1-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
buster-backports | 9.0.1+dfsg1-8~bpo10+2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
trixie | 9.3.0+dfsg1-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 9.0.1+dfsg1-8 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 9.1.0+really9.1.0+dfsg2-5 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
upstream | 9.3.1 |
|
License: DFSG free
|
Visualization Toolkit (VTK) to system oprogramowania typu open source
do grafiki komputerowej 3D, przetwarzania obrazu i wizualizacji.
Pakiet dostarcza pliki nagłówkowe VTK wymagane do kompilacji programów
napisanych w C++ i korzystających z VTK GUI.
Please cite:
Will Schroeder, Ken Martin and Bill Lorensen:
The Visualization Toolkit (4th ed.)
(2006)
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libxdf-dev
C++ library for loading XDF files (headers and static lib)
|
Versions of package libxdf-dev |
Release | Version | Architectures |
bookworm | 0.99.8+dfsg-2 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 0.99.6+dfsg-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 0.98+dfsg-1 | amd64,arm64,armhf,i386 |
trixie | 0.99.8+dfsg-3 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 0.99.8+dfsg-3 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
upstream | 0.99.9 |
|
License: DFSG free
|
Libxdf is a cross-platform C++ library for loading multimodal, multi-
rate signals stored in XDF files. Libxdf is used in the biosignal
viewing application SigViewer. It can also be integrated into other C++
applications.
This package contains the header files and the static library
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octave-bart
|
Versions of package octave-bart |
Release | Version | Architectures |
trixie | 0.9.00-2 | all |
buster | 0.4.04-2 | all |
bullseye | 0.6.00-3+deb11u1 | all |
bookworm | 0.8.00-3 | all |
stretch | 0.4.00-1 | all |
sid | 0.9.00-2 | all |
|
License: DFSG free
|
The Berkeley Advanced Reconstruction Toolbox (BART) is a free and
open-source image-reconstruction framework for Computational Magnetic
Resonance Imaging.
This package provides Octave bindings for BART.
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octave-dicom
manipulate DICOM files in Octave
|
Versions of package octave-dicom |
Release | Version | Architectures |
sid | 0.6.0-3 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 0.6.0-3 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x |
bullseye | 0.4.0-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 0.2.1-5 | amd64,arm64,armhf,i386 |
bookworm | 0.5.1-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
upstream | 0.6.1 |
|
License: DFSG free
|
Digital communications in medicine (DICOM) is an information
standard, originally created for image transfer, which now deals with
a large range of medical data.
This package provides functions to read and (eventually) write DICOM
files in Octave, a scientific computation software. The functions in
the package are intended to have similar usage as the dicom functions
in the Matlab Image Processing Toolbox. In Octave they are separate:
most image package users will not use dicom, and its dependency might
be considered troublesome.
This Octave add-on package is part of the Octave-Forge project.
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octave-gdf
IO library for the GDF -- Octave interface
|
Versions of package octave-gdf |
Release | Version | Architectures |
jessie | 0.1.2-2 | amd64,armel,armhf,i386 |
stretch | 0.1.2-2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
buster | 0.1.2-2.1 | amd64,arm64,armhf,i386 |
bullseye | 0.1.3-8 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 0.1.3-11 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 0.1.3-11.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x |
sid | 0.1.3-11.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
|
License: DFSG free
|
GDF (General Dataformat for Biosignals) is intended to provide a generic
storage for biosignals, such as EEG, ECG, MEG etc.
This package provides Octave bindings for libgdf.
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odin
develop, simulate and run magnetic resonance sequences
|
Versions of package odin |
Release | Version | Architectures |
buster | 2.0.3-1 | amd64,arm64,armhf,i386 |
jessie | 1.8.8-1 | amd64,armel,armhf,i386 |
sid | 2.0.5-7 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 2.0.5-7 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 2.0.5-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 2.0.4-3 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
|
License: DFSG free
|
ODIN is a framework for magnetic resonance imaging (MRI).
It covers the whole toolchain of MRI, from low-level data acquisition
to image reconstruction. In particular, it aims at rapid prototyping
of MRI sequences. The sequences can be programmed using a high-level,
object oriented, C++ programming interface. It provides advanced
sequence analysis tools, such as interactive plotting of k-space
trajectories, a user interface for a fast compile-link-test cycle
and a powerful MRI simulator which supports different virtual samples.
For fast and flexible image reconstruction, ODIN contains a highly
customizable, multi-threaded data-processing framework.
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python3-biosig
Python3 bindings for BioSig library
|
Versions of package python3-biosig |
Release | Version | Architectures |
bullseye | 2.1.2-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 2.6.1-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
buster | 1.9.3-2 | amd64,arm64,armhf,i386 |
bookworm | 2.5.0-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
sid | 2.6.1-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
|
License: DFSG free
|
This package provides Python3 bindings for BioSig library. Primary
goal -- I/O interface to variety of biomedical file formats, including
but not limited to SCP-ECG(EN1064), HL7aECG (FDA-XML), GDF, EDF.
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python3-bioxtasraw
process biological small angle scattering data
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Versions of package python3-bioxtasraw |
Release | Version | Architectures |
bookworm | 2.1.1-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el |
sid | 2.2.2-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el |
upstream | 2.3.0 |
|
License: DFSG free
|
BioXTAS RAW is a GUI based, Python program for reduction and
analysis of small-angle X-ray solution scattering (SAXS) data.
The package is designed for biological SAXS data.
BioXTAS RAW provides an alternative to closed source programs
such as Primus and Scatter for primary data analysis. Because
it can calibrate, mask, and integrate images it also provides
an alternative to synchrotron beamline pipelines that scientists
can install on their own computers and use both at home and at
the beamline.
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python3-brian
simulator for spiking neural networks
|
Versions of package python3-brian |
Release | Version | Architectures |
bookworm | 2.5.1-3 | all |
bullseye | 2.4.2-6 | all |
sid | 2.7.1+ds-1 | all |
trixie | 2.7.1+ds-1 | all |
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License: DFSG free
|
Brian is a clock-driven simulator for spiking neural networks. It is
designed with an emphasis on flexibility and extensibility, for rapid
development and refinement of neural models. Neuron models are
specified by sets of user-specified differential equations, threshold
conditions and reset conditions (given as strings). The focus is
primarily on networks of single compartment neuron models (e.g. leaky
integrate-and-fire or Hodgkin-Huxley type neurons). Features include:
- a system for specifying quantities with physical dimensions
- exact numerical integration for linear differential equations
- Euler, Runge-Kutta and exponential Euler integration for nonlinear
differential equations
- synaptic connections with delays
- short-term and long-term plasticity (spike-timing dependent plasticity)
- a library of standard model components, including integrate-and-fire
equations, synapses and ionic currents
- a toolbox for automatically fitting spiking neuron models to
electrophysiological recordings
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python3-dcmstack
DICOM to NIfTI conversion - python3 package
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Versions of package python3-dcmstack |
Release | Version | Architectures |
trixie | 0.9-3 | all |
sid | 0.9-3 | all |
bookworm | 0.9-1 | all |
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License: DFSG free
|
DICOM to NIfTI conversion with the added ability to extract and summarize
meta data from the source DICOMs. The meta data can be injected into a
NIfTI header extension or written out as a JSON formatted text file.
This package provides the Python3 package.
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python3-dipy
Python library for the analysis of diffusion MRI datasets
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Versions of package python3-dipy |
Release | Version | Architectures |
bookworm | 1.6.0-1 | all |
bullseye | 1.3.0-3 | all |
sid | 1.9.0-5 | all |
trixie | 1.9.0-5 | all |
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License: DFSG free
|
DIPY is a software project for computational neuroanatomy. It focuses
on diffusion magnetic resonance imaging (dMRI) analysis and
tractography but also contains implementations of other computational
imaging methods such as denoising and registration that are
applicable to the greater medical imaging and image processing
communities. Additionally, DIPY is an international project which
brings together scientists across labs and countries to share their
state-of-the-art code and expertise in the same codebase,
accelerating scientific research in medical imaging.
Here are some of the highlights:
- Reconstruction algorithms: CSD, DSI, GQI, DTI, DKI, QBI, SHORE
and MAPMRI
- Fiber tracking algorithms: deterministic and probabilistic
- Native linear and nonlinear registration of images
- Fast operations on streamlines (selection, resampling, registration)
- Tractography segmentation and clustering
- Many image operations, e.g., reslicing or denoising with NLMEANS
- Estimation of distances/correspondences between streamlines and
connectivity matrices
- Interactive visualization of streamlines in the space of images
This package contains the Python 3 version.
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python3-gdcm
Grassroots DICOM Python bindings
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Versions of package python3-gdcm |
Release | Version | Architectures |
bullseye-backports | 3.0.17-4~bpo11+1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 3.0.8-2 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 2.8.8-9 | amd64,arm64,armhf,i386 |
trixie | 3.0.24-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 3.0.24-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 3.0.21-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
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License: DFSG free
|
Grassroots DiCoM is a C++ library for DICOM medical files. It is
automatically wrapped to python/C#/Java (using swig). It supports
RAW,JPEG (lossy/lossless),J2K,JPEG-LS, RLE and deflated.
Python bindings to the GDCM DICOM library.
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python3-imageio
library for reading and writing image data (Python 3)
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Versions of package python3-imageio |
Release | Version | Architectures |
buster | 2.4.1-2 | all |
bookworm | 2.4.1-5 | all |
trixie | 2.35.1-1 | all |
sid | 2.35.1-1 | all |
bullseye | 2.4.1-3 | all |
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License: DFSG free
|
Imageio is a Python library that provides an easy interface to read and write
a wide range of image data, including animated images, video, volumetric data,
and scientific formats.
This package provides the library for Python 3.
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python3-mia
Python-3 bindings for the MIA image processing library
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Versions of package python3-mia |
Release | Version | Architectures |
bullseye | 0.1.9-2.1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 0.1.9-2.1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
sid | 0.1.9-2.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
buster | 0.1.9-2 | amd64,arm64,armhf,i386 |
stretch | 0.1.9-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 0.1.6-1 | amd64,i386 |
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License: DFSG free
|
MIA comprises a set of tools, libraries, and plug-ins for general purpose
2D and 3D gray scale image processing and basic handling of triangular
meshes. The libraries provide a basic infrastructure and generic
algorithms, that can be specialized by specifying the appropriate plug-ins.
This package provides the Python-3 bindings.
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python3-mne
Python modules for MEG and EEG data analysis
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Versions of package python3-mne |
Release | Version | Architectures |
bookworm | 1.3.0+dfsg-1 | all |
sid | 1.8.0-1 | all |
trixie | 1.8.0-1 | all |
bullseye | 0.19.1+dfsg-1 | all |
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License: DFSG free
|
This package is designed for sensor- and source-space analysis of MEG
and EEG data, including frequency-domain and time-frequency analyses
and non-parametric statistics.
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python3-nibabel
Python3 bindings to various neuroimaging data formats
|
Versions of package python3-nibabel |
Release | Version | Architectures |
trixie | 5.2.1-2 | all |
bookworm | 5.0.0-2 | all |
bullseye | 3.2.1-2 | all |
sid | 5.2.1-2 | all |
buster | 2.3.2-1 | all |
stretch | 2.1.0-1 | all |
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License: DFSG free
|
NiBabel provides read and write access to some common medical and
neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI,
NIfTI1, MINC, as well as PAR/REC. The various image format classes give full
or selective access to header (meta) information and access to the image data
is made available via NumPy arrays. NiBabel is the successor of PyNIfTI.
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python3-nipy
Analysis of structural and functional neuroimaging data
|
Versions of package python3-nipy |
Release | Version | Architectures |
sid | 0.6.0-2 | all |
bookworm | 0.5.0-7 | all |
sid | 0.6.0-1 | all |
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License: DFSG free
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NiPy is a Python-based framework for the analysis of structural and
functional neuroimaging data. It provides functionality for
- General linear model (GLM) statistical analysis
- Combined slice time correction and motion correction
- General image registration routines with flexible cost functions,
optimizers and re-sampling schemes
- Image segmentation
- Basic visualization of results in 2D and 3D
- Basic time series diagnostics
- Clustering and activation pattern analysis across subjects
- Reproducibility analysis for group studies
Please cite:
K. Jarrod Millman and Matthew Brett:
Analysis of functional magnetic resonance imaging in Python
(eprint)
Computing in Science & Engineering
9(3):52-55
(2007)
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python3-nipype
Neuroimaging data analysis pipelines in Python3
|
Versions of package python3-nipype |
Release | Version | Architectures |
bookworm | 1.8.5-3 | all |
sid | 1.8.6-3 | all |
bullseye | 1.6.0-2 | all |
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License: DFSG free
|
Nipype interfaces Python to other neuroimaging packages and creates
an API for specifying a full analysis pipeline in Python. Currently,
it has interfaces for SPM, FSL, AFNI, Freesurfer, but could be
extended for other packages (such as lipsia).
Please cite:
SS Ghosh, C Burns, D Clark, K Gorgolewski, YO Halchenko, C Madison, R Tungaraza and KJ Millman:
Nipype: Opensource platform for unified and replicable interaction with existing neuroimaging tools
(eprint)
16th Annual Meeting of the Organization for Human Brain Mapping
:106
(2010)
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python3-nitime
timeseries analysis for neuroscience data (nitime)
|
Versions of package python3-nitime |
Release | Version | Architectures |
bookworm | 0.9-5 | all |
bullseye | 0.9-1 | all |
sid | 0.10.2-2 | all |
upstream | 0.11 |
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License: DFSG free
|
Nitime is a Python module for time-series analysis of data from
neuroscience experiments. It contains a core of numerical algorithms
for time-series analysis both in the time and spectral domains, a set
of container objects to represent time-series, and auxiliary objects
that expose a high level interface to the numerical machinery and
make common analysis tasks easy to express with compact and
semantically clear code.
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python3-openslide
Python 3 wrapper for reading whole slide image files
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Versions of package python3-openslide |
Release | Version | Architectures |
buster | 1.1.1-4 | amd64,arm64,armhf,i386 |
stretch | 1.1.1-2 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 1.0.1-5 | all |
sid | 1.3.1-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 1.3.1-2 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,s390x |
bookworm | 1.2.0-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye | 1.1.2-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
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License: DFSG free
|
OpenSlide is a C library that provides a simple interface to read whole-slide
images also known as virtual slides.
Whole-slide images, also known as virtual slides, are large, high resolution
images used in digital pathology. Reading these images using standard image
tools or libraries is a challenge because these tools are typically designed
for images that can comfortably be uncompressed into RAM or a swap file.
Whole-slide images routinely exceed RAM sizes, often occupying tens of
gigabytes when uncompressed. Additionally, whole-slide images are typically
multi-resolution, and only a small amount of image data might be needed at a
particular resolution.
This library currently supports:
- Aperio (.svs, .tif)
- Hamamatsu (.vms, .vmu, .ndpi)
- Leica (.scn)
- MIRAX (.mrxs)
- Sakura (.svslide)
- Trestle (.tif)
- Generic tiled TIFF (.tif)
This package contains the Python 3 module needed to run OpenSlide applications.
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python3-pydicom
DICOM medical file reading and writing (Python 3)
|
Versions of package python3-pydicom |
Release | Version | Architectures |
sid | 2.4.3-1 | all |
buster | 1.2.1-1 | all |
bullseye | 2.0.0-1 | all |
bookworm | 2.3.1-1 | all |
trixie | 2.4.3-1 | all |
upstream | 2.4.4 |
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License: DFSG free
|
pydicom is a pure Python module for parsing DICOM files. DICOM is a
standard (http://medical.nema.org) for communicating medical images
and related information such as reports and radiotherapy objects.
pydicom makes it easy to read DICOM files into natural pythonic
structures for easy manipulation. Modified datasets can be written
again to DICOM format files.
This package installs the module for Python 3.
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python3-pyxnat
Interface to access neuroimaging data on XNAT servers
|
Versions of package python3-pyxnat |
Release | Version | Architectures |
trixie | 1.6.2-2 | all |
bullseye | 1.4-1 | all |
bookworm | 1.5-2 | all |
sid | 1.6.2-2 | all |
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License: DFSG free
|
pyxnat is a simple Python library that relies on the REST API provided
by the XNAT platform since its 1.4 version. XNAT is an extensible
database for neuroimaging data. The main objective is to ease
communications with an XNAT server to plug-in external tools or Python
scripts to process the data. It features:
- resources browsing capabilities
- read and write access to resources
- complex searches
- disk-caching of requested files and resources
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python3-torchvision
Datasets, Transforms and Models specific to Computer Vision
|
Versions of package python3-torchvision |
Release | Version | Architectures |
sid | 0.15.2-1 | amd64,arm64,ppc64el,s390x |
bullseye | 0.8.2-1 | amd64,arm64,armhf,ppc64el,s390x |
bookworm | 0.14.1-2 | amd64,arm64,ppc64el,s390x |
upstream | 0.19.0 |
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License: DFSG free
|
The torchvision package consists of popular datasets, model architectures, and
common image transformations for computer vision.
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python3-vigra
Python3 bindings for the C++ computer vision library
|
Versions of package python3-vigra |
Release | Version | Architectures |
bookworm | 1.11.1+dfsg-11 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
sid | 1.12.1+dfsg-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 1.11.1+dfsg-8 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 1.11.2+dfsg-3 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
|
License: DFSG free
|
Vision with Generic Algorithms (VIGRA) is a computer vision library
that puts its main emphasis on flexible algorithms, because
algorithms represent the principle know-how of this field. The
library was consequently built using generic programming as
introduced by Stepanov and Musser and exemplified in the C++ Standard
Template Library. By writing a few adapters (image iterators and
accessors) you can use VIGRA's algorithms on top of your data
structures, within your environment.
This package exports the functionality of the VIGRA library to Python3.
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Official Debian packages with lower relevance
libcamp-dev
C++ multi-purpose reflection library (development files)
|
Versions of package libcamp-dev |
Release | Version | Architectures |
sid | 0.8.4-4.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
buster | 0.8.2-1 | amd64,arm64,armhf,i386 |
bullseye | 0.8.4-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 0.8.4-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 0.8.4-4.1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
|
License: DFSG free
|
CAMP is a multi-purpose reflection library developed by Technogerma Systems
France (http://www.tegesoft.com).
It provides an abstraction for most of the high-level concepts of C++
- Classes
- Enumerations
- Properties
- Functions
- Objects
- Variables
By wrapping all these concepts into abstract structures, CAMP provides an
extra layer of flexibility to programs, and allow them to fully expose their
data structures at runtime.
Many applications can take advantage of CAMP, in order to automate tasks which
would otherwise require a huge amount of work. For example, CAMP can be used
to expose and edit objects' attributes into a graphical user interface. It can
also be used to do automatic binding of C++ classes to script languages such as
Python or Lua.
Another possible application would be the serialization of objects to XML, text
or binary formats. Or you can even combine all these examples to provide a
powerful and consistent interface for manipulating your objects outside C++
code.
This package contains the files needed for development.
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libeegdev-dev
Biosignal acquisition device library (Development files)
|
Versions of package libeegdev-dev |
Release | Version | Architectures |
sid | 0.2-9 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 0.2-5 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 0.2-9 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
jessie | 0.2-3.1 | amd64,armel,armhf,i386 |
stretch | 0.2-3.1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
buster | 0.2-4 | amd64,arm64,armhf,i386 |
bookworm | 0.2-6 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
Debtags of package libeegdev-dev: |
devel | library |
role | devel-lib |
|
License: DFSG free
|
eegdev is a library that provides a unified interface for accessing various
EEG (and other biosignals) acquisition systems. This interface has been
designed to be both flexible and efficient. The device specific part is
implemented by the means of plugins which makes adding new device backend
fairly easy even if the library does not support them yet officially.
The core library not only provides to users a unified and consistent
interface to the acquisition device but it also provides many
functionalities to the device backends (plugins) ranging from configuration
to data casting and scaling making writing new device backend an easy task.
This library is particularly useful to handle the acquisition part of a
Brain Computer Interface (BCI) or any realtime multi-electrode acquisition
in neurophysiological research.
This package contains the files needed to compile and link programs which
use eegdev. It provides also the headers needed to develop new device
plugins. The manpages and examples are shipped in this package.
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libfreeimage-dev
Support library for graphics image formats (development files)
|
Versions of package libfreeimage-dev |
Release | Version | Architectures |
buster | 3.18.0+ds2-1+deb10u1 | amd64,arm64,armhf,i386 |
stretch | 3.17.0+ds1-5+deb9u1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie-security | 3.15.4-4.2+deb8u2 | amd64,armel,armhf,i386 |
sid | 3.18.0+ds2-10 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
trixie | 3.18.0+ds2-10 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm-security | 3.18.0+ds2-9+deb12u1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 3.18.0+ds2-9+deb12u1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bullseye-security | 3.18.0+ds2-6+deb11u1 | amd64,arm64,armhf,i386 |
bullseye | 3.18.0+ds2-6+deb11u1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster-security | 3.18.0+ds2-1+deb10u2 | amd64,arm64,armhf,i386 |
jessie | 3.15.4-4.2+deb8u1 | amd64,armel,armhf,i386 |
stretch-security | 3.17.0+ds1-5+deb9u1 | amd64,arm64,armel,armhf,i386 |
Debtags of package libfreeimage-dev: |
devel | library |
role | devel-lib |
|
License: DFSG free
|
FreeImage is an Open Source C/C++ library project for developers who would
like to support popular graphics image formats like PNG, BMP, JPEG, TIFF
and others as needed by today's multimedia applications. FreeImage is
easy to use, fast, multithreading safe, and cross-platform (works both
with Linux, 32 bit Windows and Mac OS X).
This package contains the headers and static libraries needed to develop
programs using FreeImage.
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libics-dev
Image Cytometry Standard file reading and writing (devel)
|
Versions of package libics-dev |
Release | Version | Architectures |
jessie | 1.5.2-6 | amd64,armel,armhf,i386 |
stretch | 1.5.2-6 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
buster | 1.6.2-2 | amd64,arm64,armhf,i386 |
bullseye | 1.6.4-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
bookworm | 1.6.6-1 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
trixie | 1.6.6-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
sid | 1.6.6-1 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
Debtags of package libics-dev: |
devel | library |
role | devel-lib |
|
License: DFSG free
|
This is the reference library for ICS (Image Cytometry Standard), an open
standard for writing images of any dimensionality and data type to file,
together with associated information regarding the recording equipment or
recorded subject.
This package contains the libraries needed to build ICS applications.
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liblimereg-dev
Library for lightweight image registration [development files]
|
Versions of package liblimereg-dev |
Release | Version | Architectures |
buster | 1.4.1-4 | amd64,arm64,armhf,i386 |
|
License: DFSG free
|
Liblimereg automatically aligns two images with similar content to each other.
Given two 2D images the algorithm returns the rigid transformation
parameters detected for the best possible alignment (shift, rotation). There
are also functions for a rigid image transformation (shift, rotation) and
for creating a difference image out of two images.
This package contains the static library and the header file.
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libnifti-doc
NIfTI library API documentation
|
Versions of package libnifti-doc |
Release | Version | Architectures |
jessie | 2.0.0-2 | all |
trixie | 3.0.1-9.1 | all |
bullseye | 3.0.1-8 | all |
sid | 3.0.1-9.1 | all |
bookworm | 3.0.1-9 | all |
buster | 2.0.0-3 | all |
stretch | 2.0.0-2 | all |
Debtags of package libnifti-doc: |
devel | doc, lang:c, library |
made-of | html |
role | documentation, source |
|
License: DFSG free
|
Niftilib is a set of i/o libraries for reading and writing files in the
NIfTI-1 data format. NIfTI-1 is a binary file format for storing medical
image data, e.g. magnetic resonance image (MRI) and functional MRI (fMRI)
brain images.
This package provides the library API reference documentation.
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libxdffileio-dev
Library to read/write EEG data file formats (development files)
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Versions of package libxdffileio-dev |
Release | Version | Architectures |
trixie | 0.3-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bullseye | 0.3-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
buster | 0.3-2.1 | amd64,arm64,armhf,i386 |
stretch | 0.3-1 | amd64,arm64,armel,armhf,i386,mips,mips64el,mipsel,ppc64el,s390x |
jessie | 0.3-1 | amd64,armel,armhf,i386 |
sid | 0.3-4 | amd64,arm64,armel,armhf,i386,mips64el,ppc64el,riscv64,s390x |
bookworm | 0.3-4 | amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,s390x |
Debtags of package libxdffileio-dev: |
devel | library |
role | devel-lib |
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License: DFSG free
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xdffileio is a library that provides a unified interface for writing and
reading various biosignal file formats in realtime (i.e. streaming). It has
been designed to provide a flexible, consistent and generic interface to
all supported file formats while minimizing the overhead the function
calls: the heaviest operations (type casting, scaling and formatting) are
offloaded into a separated thread. This design makes its particularly
suitable to be directly used in a data acquisition loop (like in
electrophysiology recording or in Brain-Computer Interfaces (BCI)).
The genericity of the interface makes trivial various operations like
transformation of a recorded file or its conversion to another file format.
xdffileio currently supports EDF, BDF, GDF1 and GDF2 file formats and more
will be added in future.
This package contains the files needed to compile and link programs which
use xdffileio.
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tifffile
Read and write image data from and to TIFF files
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Versions of package tifffile |
Release | Version | Architectures |
buster | 20181128-1+deb10u1 | amd64,arm64,armhf,i386 |
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License: DFSG free
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Image and meta-data can be read from TIFF, BigTIFF, OME-TIFF, STK, LSM, NIH,
ImageJ, MicroManager, FluoView, SEQ and GEL files.
Only a subset of the TIFF specification is supported, mainly uncompressed and
losslessly compressed 2**(0 to 6) bit integer, 16, 32 and 64-bit float,
grayscale and RGB(A) images, which are commonly used in bio-scientific imaging.
Specifically, reading JPEG/CCITT compressed image data or EXIF/IPTC/GPS/XMP
meta-data is not implemented. Only primary info records are read for STK,
FluoView, MicroManager, and NIH image formats.
TIFF, the Tagged Image File Format, is under the control of Adobe Systems.
BigTIFF allows for files greater than 4 GB. STK, LSM, FluoView, SEQ, GEL, and
OME-TIFF, are custom extensions defined by MetaMorph, Carl Zeiss MicroImaging,
Olympus, Media Cybernetics, Molecular Dynamics, and the Open Microscopy
Environment consortium respectively.
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Debian packages in contrib or non-free
libvmtk-dev
shared links and header files for vmtk
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Versions of package libvmtk-dev |
Release | Version | Architectures |
buster | 1.3+dfsg-2.3 (non-free) | amd64,i386 |
jessie | 1.0.1-3 (non-free) | amd64,armel,armhf,i386 |
stretch | 1.3+dfsg-2.1+deb9u1 (non-free) | amd64,i386 |
Debtags of package libvmtk-dev: |
devel | library |
role | devel-lib |
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License: non-free
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The Vascular Modeling Toolkit is a collection of libraries and tools for
3D reconstruction, geometric analysis, mesh generation and surface data
analysis for image-based modeling of blood vessels.
This package contains header files and shared library links.
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python-vmtk
Python interface for vmtk
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Versions of package python-vmtk |
Release | Version | Architectures |
buster | 1.3+dfsg-2.3 (non-free) | amd64,i386 |
stretch | 1.3+dfsg-2.1+deb9u1 (non-free) | amd64,i386 |
jessie | 1.0.1-3 (non-free) | amd64,armel,armhf,i386 |
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License: non-free
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The Vascular Modeling Toolkit is a collection of libraries and tools for
3D reconstruction, geometric analysis, mesh generation and surface data
analysis for image-based modeling of blood vessels.
This package provides the Python interface for vmtk.
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Packaging has started and developers might try the packaging code in VCS
emokit
Emotiv EPOC headset Python interface
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License: BSD-3
Debian package not available
Language: Python, C
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Emotive is an interface to a budget Emotiv EPOC EEG headset.
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libbio-formats-java
reading and writing proprietary microscopy image data and metadata
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Versions of package libbio-formats-java |
Release | Version | Architectures |
VCS | 6.0.1+dfsg-1 | all |
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License: LGPL-3+
Debian package not available
Version: 6.0.1+dfsg-1
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Bio-Formats is a standalone Java library for reading and writing life sciences
image file formats. It is capable of parsing both pixels and metadata for a
large number of formats, as well as writing to several formats.
Bio-Formats's primary purpose is to convert proprietary microscopy data into an
open standard called the OME data model, particularly into the OME-TIFF file
format.
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libctk-dev
toolkit for medical imaging application development - devel
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Versions of package libctk-dev |
Release | Version | Architectures |
VCS | 0.1.0+git20160903~cdb75ce-1 | all |
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License: Apache License, Version 2.0
Debian package not available
Version: 0.1.0+git20160903~cdb75ce-1
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The goals of CTK are as follows:
- Provide a unified set of basic programming constructs that are useful for
medical imaging applications development
- Facilitate the exchange and combination of code and data
- Document, integrate, and adapt successful solutions
- Avoid the duplication of code and data
- Continuously extend to new tasks within the scope of the toolkit
(medical imaging) without burdening existing tasks
This package provides the CTK header files required to compile C++ programs
that use CTK.
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libopenmeeg-dev
openmeeg library -- development files
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Versions of package libopenmeeg-dev |
Release | Version | Architectures |
VCS | 2.4.2-1 | all |
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License: CeCILL-B
Debian package not available
Version: 2.4.2-1
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OpenMEEG consists of state-of-the art solvers for forward problems in
the field of MEG and EEG. Solvers are based on the symmetric
Boundary Element method [Kybic et al, 2005], providing excellent
accuracy, particularly for superficial cortical sources. OpenMEEG can
compute four types of lead fields (EEG, MEG, Internal Potential and
Electrical Impedence Tomography).
This package provides static libraries and header files.
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libopenslide-java
java wrapper for reading whole slide image files
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Versions of package libopenslide-java |
Release | Version | Architectures |
VCS | 0.12.2-1 | all |
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License: LGPL-2.1
Debian package not available
Version: 0.12.2-1
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OpenSlide is a C library that provides a simple interface to read whole-slide
images also known as virtual slides.
Whole-slide images, also known as virtual slides, are large, high resolution
images used in digital pathology. Reading these images using standard image
tools or libraries is a challenge because these tools are typically designed
for images that can comfortably be uncompressed into RAM or a swap file.
Whole-slide images routinely exceed RAM sizes, often occupying tens of
gigabytes when uncompressed. Additionally, whole-slide images are typically
multi-resolution, and only a small amount of image data might be needed at a
particular resolution.
This library currently supports:
- Trestle (.tif)
- Hamamatsu (.vms, .vmu)
- Aperio (.svs, .tif)
- MIRAX (.mrxs)
- Generic tiled TIFF (.tif)
This package contains the java module needed to run OpenSlide applications.
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libvia-dev
library for volumetric image analysis
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Versions of package libvia-dev |
Release | Version | Architectures |
VCS | 1.6.0-3.1 | all |
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License: free
Debian package not available
Version: 1.6.0-3.1
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VIA is a volumetric image analysis suite. The included libraries provide
about 70 image analysis functions.
This package provides the header files and static libraries of vialib, vxlib
and viaio.
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Unofficial packages built by somebody else
libmni-perllib-perl
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License: Artistic License
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Collection of various Perl module used by other MNI software
packages.
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