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Covid-19 - Quality Assurance

Summary

Autoremovals: 30

Migration issues: 11

CI failures: 48

Install issues: 16

No issues: 123/233

This task exists only for tagging COVID-19 relevant cases

The Debian Med team intends to take part at the COVID-19 Biohackathon (April 5-11, 2020) This task was created only for the purpose to list relevant packages.

gubbins

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

Continuous integration (CI) tests are failing:

Piuparts failed:

augur

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ CI

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest
  • No tests in this package or all skipped

busco

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ CI

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

Continuous integration (CI) tests are failing:

gnumed-client

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ CI

Package marked for automatic removal:

  • Will be removed on: 2022-07-12
  • Dependencies leading to autoremoval: wxpython4.0
  • Bugs in dependencies leading to autoremoval: #1011697

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest
  • No tests in this package or all skipped

presto

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ CI

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest-pkg-python
  • No tests in this package or all skipped

python-cgecore

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ CI

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest-pkg-python
  • No tests in this package or all skipped

readucks

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ CI

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

Continuous integration (CI) tests are failing:

toil

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ CI

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest
  • No tests in this package or all skipped

snakemake

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

Piuparts failed:

python-seqcluster

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜‘ Tests missing

Package marked for automatic removal:

  • Will be removed on: 2022-07-05
  • Bugs leading to autoremoval: #1012386
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

Continuous integration (CI) tests are missing.

smrtanalysis

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜‘ Tests missing

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

Continuous integration (CI) tests are missing.

changeo

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

cwltool

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

kallisto

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

nanofilt

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

nanolyse

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

python-biopython

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

python-gffutils

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

python-nanoget

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

python-pauvre

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

python-pbcommand

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

python-pbcore

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

python-pyani

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

python-pyfaidx

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

python-treetime

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

qcat

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

recan

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

seqmagick

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

tnseq-transit

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-12
  • Dependencies leading to autoremoval: wxpython4.0
  • Bugs in dependencies leading to autoremoval: #1011697

yanagiba

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

bcbio

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest-pkg-python
  • No tests in this package or all skipped

Migration from unstable to testing is blocked:

  • Not in testing for 47 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends
  • Invalidated by another package
  • Blocked by: salmon
  • Migrates after: hts-nim-tools, mosdepth

drmaa

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 863 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

epigrass

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest
  • Erroneous package
  • Tests failed

Migration from unstable to testing is blocked:

  • Not in testing for 218 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: python-epimodels

python-cogent

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest, autopkgtest-pkg-python
  • Erroneous package

Migration from unstable to testing is blocked:

  • Not in testing for 214 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: jupyter-sphinx

pytorch

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 70 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Migrates after: onnx

spades

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest
  • Erroneous package
  • Tests failed

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 43 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

umap-learn

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 156 days.
  • Verdict: Rejected/violates migration policy/introduces a regression

gromacs

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

imagej

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest
  • No tests in this package or all skipped

Piuparts failed:

pigx-rnaseq

๐Ÿ˜Ÿ Migration

๐Ÿ˜‘ Tests missing

Migration from unstable to testing is blocked:

  • Not in testing for 47 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends, depends
  • Invalidated by another package
  • Blocked by: salmon

Continuous integration (CI) tests are missing.

salmon

๐Ÿ˜Ÿ Migration

๐Ÿ˜‘ Tests missing

Migration from unstable to testing is blocked:

  • Not in testing for 47 days.
  • Verdict: Rejected/violates migration policy/introduces a regression

Continuous integration (CI) tests are missing.

python-cooler

๐Ÿ˜Ÿ Migration

Migration from unstable to testing is blocked:

  • Has been in Debian for 707 days, but never migrated to testing.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

python-streamz

๐Ÿ˜Ÿ Migration

Migration from unstable to testing is blocked:

  • Not in testing for 61 days.
  • Verdict: Rejected/violates migration policy/introduces a regression

centrifuge

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest
  • No tests in this package or all skipped

fasta3

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

gffread

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

htseq

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest-pkg-python
  • No tests in this package or all skipped

ivar

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

mecat2

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

megahit

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

metabat

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

muscle

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

nanosv

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest
  • No tests in this package or all skipped

odil

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest-pkg-python
  • No tests in this package or all skipped

parallel-fastq-dump

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

pinfish

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest
  • No tests in this package or all skipped

plink1.9

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

porechop

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest
  • No tests in this package or all skipped

pychopper

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest, autopkgtest-pkg-python
  • Tests failed

pydicom

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest-pkg-python
  • No tests in this package or all skipped

pynn

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest-pkg-python
  • No tests in this package or all skipped

python3-typed-ast

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest-pkg-python
  • No tests in this package or all skipped

python-bx

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest-pkg-python
  • No tests in this package or all skipped

python-depinfo

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest-pkg-python
  • No tests in this package or all skipped

python-pybedtools

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest-pkg-python
  • No tests in this package or all skipped

r-bioc-rsamtools

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

r-bioc-tcgabiolinks

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

sepp

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

seqan3

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest
  • Tests failed
  • No tests in this package or all skipped

shovill

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest
  • No tests in this package or all skipped

unicycler

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest
  • No tests in this package or all skipped

vg

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest
  • No tests in this package or all skipped

wtdbg2

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

yanosim

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest-pkg-python
  • No tests in this package or all skipped

dcmtk

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

plasmidid

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

texlive-extra

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

workrave

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

aeskulap

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

bbmap

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

fastqc

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

picard-tools

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

plip

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

r-cran-msm

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

r-cran-qtl

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

r-cran-surveillance

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

cat-bat

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

clonalframeml

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

delly

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

dextractor

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

gdcm

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

gnumed-server

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

htscodecs

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

libchipcard

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

libics

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

libmaus2

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

macromoleculebuilder

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

milib

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

node-shiny-server

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

orthanc

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

orthanc-dicomweb

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

orthanc-python

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

orthanc-wsi

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

pplacer

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

r-other-ascat

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

thesias

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

tipp

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

tophat-recondition

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

varscan

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

vienna-rna

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.