Help us to see Debian used by medical practitioners and biomedical researchers! Join us on the Salsa page.

Cloud - Quality Assurance

Summary

Autoremovals: 4

Migration issues: 4

CI failures: 15

Install issues: 11

No issues: 99/141

Debian Med bioinformatics applications usable in cloud computing

This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences, that do not depend on graphical toolkits and therefore can fit on system images for use in cloud computing clusters, where space can be limited.

flexbar

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

gasic

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

mrbayes

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-21
  • Dependencies leading to autoremoval: pocl
  • Bugs in dependencies leading to autoremoval: #1001317

python-biopython

๐Ÿ˜Ÿ Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2022-07-22
  • Dependencies leading to autoremoval: rdflib
  • Bugs in dependencies leading to autoremoval: #1012482

python-cogent

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest, autopkgtest-pkg-python
  • Erroneous package

Migration from unstable to testing is blocked:

  • Not in testing for 214 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: jupyter-sphinx

r-cran-vegan

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest, autopkgtest-pkg-r
  • Tests failed

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 39 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

mothur

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

gromacs

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

bioperl-run

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

  • Testsuite: autopkgtest-pkg-perl
  • Erroneous package
  • Tests failed

hmmer

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

infernal

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

mummer

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

muscle

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

plink1.9

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

probabel

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

proda

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

soapdenovo

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

soapdenovo2

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

theseus

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

jellyfish

๐Ÿ˜Ÿ Migration

Migration from unstable to testing is blocked:

  • Verdict: Maybe temporary, maybe blocked but Britney is missing information
  • Reason: autopkgtest, missingbuild

melting

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

bamtools

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

bioperl

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

emboss

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

fastqc

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

neobio

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

picard-tools

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

qiime

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

r-cran-qtl

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

seqan2

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

acedb

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

anfo

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

arden

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

biomaj3-cli

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

cufflinks

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

embassy-domainatrix

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

embassy-domalign

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

embassy-domsearch

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

phyutility

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

rtax

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

sibsim4

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

zalign

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.