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Cloud - Quality Assurance

Summary

Autoremovals: 7

Migration issues: 13

CI failures: 26

Install issues: 119

No issues: 16/141

Debian Med bioinformatics applications usable in cloud computing

This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences, that do not depend on graphical toolkits and therefore can fit on system images for use in cloud computing clusters, where space can be limited.

phyml

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Package marked for automatic removal:

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 14 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: openmpi

Piuparts failed:

  • Version: 3:3.2.0+dfsg-7~bpo8+1
  • Sections: jessie2bpo

tree-puzzle

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-11
  • Bugs leading to autoremoval: #1086203 #1086907
  • Will result in removal of arb with total popcon score of 0

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 57 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: openmpi

Piuparts failed:

gasic

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-21
  • Dependencies leading to autoremoval: phyml
  • Bugs in dependencies leading to autoremoval: #1086912

Continuous integration (CI) tests are failing:

Piuparts failed:

jellyfish

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Package marked for automatic removal:

Continuous integration (CI) tests are failing:

Piuparts failed:

python-biopython

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-21
  • Dependencies leading to autoremoval: phyml
  • Bugs in dependencies leading to autoremoval: #1086912

Continuous integration (CI) tests are failing:

Piuparts failed:

  • Version: 1.68+dfsg-3~bpo8+1
  • Sections: jessie2bpo

prime-phylo

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ Migration

Package marked for automatic removal:

  • Will be removed on: 2024-11-28
  • Bugs leading to autoremoval: #1086370

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 20 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: openmpi

mrbayes

๐Ÿ˜Ÿ Autoremoval

๐Ÿ˜Ÿ Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-13
  • Dependencies leading to autoremoval: pocl
  • Bugs in dependencies leading to autoremoval: #1086460

Piuparts failed:

gromacs

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 21 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: openmpi

Piuparts failed:

python-cogent

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 313 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest, missingbuild
  • Migrates after: numba

Piuparts failed:

qiime

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 88 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

Piuparts failed:

sra-sdk

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 36 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends, depends
  • Invalidated by another package
  • Blocked by: ncbi-vdb

Piuparts failed:

  • Version: 2.8.1-2+dfsg-2~bpo8+1
  • Sections: jessie2bpo

loki

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

Piuparts failed:

acedb

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Migration from unstable to testing is blocked:

  • Not in testing for 62 days.
  • Verdict: Rejected/violates migration policy/introduces a regression

Piuparts failed:

Continuous integration (CI) tests are missing.

anfo

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Migration from unstable to testing is blocked:

  • Not in testing for 827 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest, depends

Piuparts failed:

Continuous integration (CI) tests are missing.

abyss

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 21 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: openmpi

Piuparts failed:

mlv-smile

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Migration from unstable to testing is blocked:

  • Not in testing for 49 days.
  • Verdict: Rejected/violates migration policy/introduces a regression

Piuparts failed:

bioperl

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

bowtie

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

bowtie2

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

emboss

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

fastqc

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

  • Version: 0.11.5+dfsg-6~bpo8+1
  • Sections: jessie2bpo

hmmer

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

infernal

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

mummer

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

muscle

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

ncbi-tools6

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

parsinsert

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

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picard-tools

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

probabel

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

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proda

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

seqan2

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

  • Version: 2.4.0+dfsg-8~bpo8+1
  • Sections: jessie2bpo

theseus

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

ampliconnoise

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Migration from unstable to testing is blocked:

  • Verdict: Rejected/violates migration policy/introduces a regression
  • Migrates after: openmpi

Piuparts failed:

biomaj3-cli

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

perm

๐Ÿ˜Ÿ CI

Continuous integration (CI) tests are failing:

embassy-domainatrix

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

melting

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

phyutility

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

rtax

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

sibsim4

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

aevol

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

altree

๐Ÿ˜Ÿ Install/upgrade

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amap-align

๐Ÿ˜Ÿ Install/upgrade

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aragorn

๐Ÿ˜Ÿ Install/upgrade

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autodocksuite

๐Ÿ˜Ÿ Install/upgrade

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autodock-vina

๐Ÿ˜Ÿ Install/upgrade

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bamtools

๐Ÿ˜Ÿ Install/upgrade

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bedtools

๐Ÿ˜Ÿ Install/upgrade

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bioperl-run

๐Ÿ˜Ÿ Install/upgrade

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biosquid

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boxshade

๐Ÿ˜Ÿ Install/upgrade

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bwa

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cassiopee

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cdbfasta

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circos

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clearcut

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clonalframe

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clustalo

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clustalw

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coils

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concavity

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conservation-code

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datamash

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dialign

๐Ÿ˜Ÿ Install/upgrade

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dialign-t

๐Ÿ˜Ÿ Install/upgrade

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discosnp

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disulfinder

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dnaclust

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dssp

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epcr

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exonerate

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fastdnaml

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fastlink

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fasttree

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fitgcp

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flexbar

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freecontact

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genometools

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gff2aplot

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gff2ps

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glam2

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hhsuite

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htslib

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idba

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kalign

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kissplice

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last-align

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macs

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mafft

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mapsembler2

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maq

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minia

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mira

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mothur

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mustang

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neobio

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paraclu

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pdb2pqr

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plink

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poa

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prank

๐Ÿ˜Ÿ Install/upgrade

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primer3

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probcons

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prodigal

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raster3d

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r-bioc-hilbertvis

๐Ÿ˜Ÿ Install/upgrade

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readseq

๐Ÿ˜Ÿ Install/upgrade

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rnahybrid

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r-other-mott-happy

๐Ÿ˜Ÿ Install/upgrade

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samtools

๐Ÿ˜Ÿ Install/upgrade

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sigma-align

๐Ÿ˜Ÿ Install/upgrade

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sim4

๐Ÿ˜Ÿ Install/upgrade

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smalt

๐Ÿ˜Ÿ Install/upgrade

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snap

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soapdenovo

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soapdenovo2

๐Ÿ˜Ÿ Install/upgrade

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ssake

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staden-io-lib

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t-coffee

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tigr-glimmer

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velvet

๐Ÿ˜Ÿ Install/upgrade

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wise

๐Ÿ˜Ÿ Install/upgrade

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cufflinks

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

embassy-domalign

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.

embassy-domsearch

๐Ÿ˜‘ Tests missing

Continuous integration (CI) tests are missing.