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Biology development - Quality Assurance

Summary

Autoremovals: 51

Migration issues: 41

CI failures: 115

Install issues: 123

No issues: 126/386

Debian Med packages for development of bioinformatics applications

This metapackage will install Debian packages which might be helpful for development of applications for biological research.

ffindex

😟 Autoremoval

😟 Migration

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Bugs leading to autoremoval: #1086910

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 14 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: depends
  • Invalidated by another package
  • Blocked by: openmpi

Piuparts failed:

pyfai

😟 Autoremoval

😟 CI

😟 Install/upgrade

Package marked for automatic removal:

Continuous integration (CI) tests are failing:

Piuparts failed:

python-biopython

😟 Autoremoval

😟 CI

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-21
  • Dependencies leading to autoremoval: phyml
  • Bugs in dependencies leading to autoremoval: #1086912

Continuous integration (CI) tests are failing:

Piuparts failed:

  • Version: 1.68+dfsg-3~bpo8+1
  • Sections: jessie2bpo

python-pbcore

😟 Autoremoval

😟 CI

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-16
  • Dependencies leading to autoremoval: h5py phyml
  • Bugs in dependencies leading to autoremoval: #1080198 #1086912

Continuous integration (CI) tests are failing:

Piuparts failed:

  • Version: 1.2.7+dfsg-2~bpo8+1
  • Sections: jessie2bpo

python-skbio

😟 Autoremoval

😟 CI

😟 Install/upgrade

Package marked for automatic removal:

Continuous integration (CI) tests are failing:

Piuparts failed:

r-bioc-cummerbund

😟 Autoremoval

😟 CI

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

Continuous integration (CI) tests are failing:

Piuparts failed:

snakemake

😟 Autoremoval

😟 CI

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-11-27
  • Dependencies leading to autoremoval: arcp phyml
  • Bugs in dependencies leading to autoremoval: #1081857 #1086912

Continuous integration (CI) tests are failing:

Piuparts failed:

  • Version: 3.9.0+dfsg-2~bpo8+1
  • Sections: jessie2bpo

python-cgecore

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2024-12-21
  • Bugs leading to autoremoval: #1084632
  • Dependencies leading to autoremoval: phyml
  • Bugs in dependencies leading to autoremoval: #1086912
  • Will result in removal of resfinder virulencefinder with total popcon score of 0

Continuous integration (CI) tests are failing:

python-cooler

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2024-12-09
  • Dependencies leading to autoremoval: h5py phyml
  • Bugs in dependencies leading to autoremoval: #1080198 #1086912

Continuous integration (CI) tests are failing:

python-ete3

😟 Autoremoval

😟 CI

Package marked for automatic removal:

Continuous integration (CI) tests are failing:

r-bioc-annotationhub

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

Continuous integration (CI) tests are failing:

r-bioc-biomart

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

Continuous integration (CI) tests are failing:

r-bioc-geoquery

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

Continuous integration (CI) tests are failing:

r-bioc-gviz

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

Continuous integration (CI) tests are failing:

r-bioc-mofa

😟 Autoremoval

😟 CI

Package marked for automatic removal:

Continuous integration (CI) tests are failing:

r-bioc-multiassayexperiment

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

Continuous integration (CI) tests are failing:

r-bioc-structuralvariantannotation

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

Continuous integration (CI) tests are failing:

r-cran-metap

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

Continuous integration (CI) tests are failing:

r-cran-shazam

😟 Autoremoval

😟 CI

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

Continuous integration (CI) tests are failing:

libhmsbeagle

😟 Autoremoval

😟 Install/upgrade

😑 Tests missing

Package marked for automatic removal:

  • Will be removed on: 2024-12-13
  • Dependencies leading to autoremoval: pocl
  • Bugs in dependencies leading to autoremoval: #1086460

Piuparts failed:

Continuous integration (CI) tests are missing.

cwltool

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-11-27
  • Dependencies leading to autoremoval: arcp
  • Bugs in dependencies leading to autoremoval: #1081857

Piuparts failed:

  • Version: 1.0.20170114120503-1~bpo8+1
  • Sections: jessie2bpo

kineticstools

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-09
  • Dependencies leading to autoremoval: h5py phyml
  • Bugs in dependencies leading to autoremoval: #1080198 #1086912

Piuparts failed:

  • Version: 0.5.1+20150828+git3aa3d96+dfsg-1~bpo8+1
  • Sections: jessie2bpo

python-pyfaidx

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-21
  • Dependencies leading to autoremoval: phyml
  • Bugs in dependencies leading to autoremoval: #1086912

Piuparts failed:

python-ruffus

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-14
  • Bugs leading to autoremoval: #1082265
  • Will result in removal of sga with total popcon score of 0

Piuparts failed:

  • Version: 2.6.3+dfsg-4~bpo8+1
  • Sections: jessie2bpo

r-cran-adegenet

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

Piuparts failed:

r-cran-adephylo

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

Piuparts failed:

r-cran-haplo.stats

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

Piuparts failed:

r-cran-phylobase

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

Piuparts failed:

biojava6-live

😟 Autoremoval

😑 Tests missing

Package marked for automatic removal:

  • Will be removed on: 2024-12-12
  • Dependencies leading to autoremoval: libapfloat-java
  • Bugs in dependencies leading to autoremoval: #1086280

Continuous integration (CI) tests are missing.

python-seqcluster

😟 Autoremoval

😑 Tests missing

Package marked for automatic removal:

  • Will be removed on: 2024-12-21
  • Dependencies leading to autoremoval: phyml
  • Bugs in dependencies leading to autoremoval: #1086912

Continuous integration (CI) tests are missing.

cwltest

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-11-27
  • Dependencies leading to autoremoval: arcp
  • Bugs in dependencies leading to autoremoval: #1081857

mirtop

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-21
  • Dependencies leading to autoremoval: phyml
  • Bugs in dependencies leading to autoremoval: #1086912

ont-fast5-api

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-09
  • Dependencies leading to autoremoval: h5py
  • Bugs in dependencies leading to autoremoval: #1080198

peptidebuilder

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-21
  • Dependencies leading to autoremoval: phyml
  • Bugs in dependencies leading to autoremoval: #1086912

presto

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-21
  • Dependencies leading to autoremoval: phyml
  • Bugs in dependencies leading to autoremoval: #1086912

pyfastx

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-21
  • Dependencies leading to autoremoval: phyml
  • Bugs in dependencies leading to autoremoval: #1086912

python-bcbio-gff

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-21
  • Dependencies leading to autoremoval: phyml
  • Bugs in dependencies leading to autoremoval: #1086912

python-biom-format

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-09
  • Dependencies leading to autoremoval: h5py
  • Bugs in dependencies leading to autoremoval: #1080198

python-gffutils

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-21
  • Dependencies leading to autoremoval: phyml
  • Bugs in dependencies leading to autoremoval: #1086912

python-nanoget

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-21
  • Dependencies leading to autoremoval: phyml
  • Bugs in dependencies leading to autoremoval: #1086912

python-pbcommand

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-09
  • Dependencies leading to autoremoval: h5py phyml
  • Bugs in dependencies leading to autoremoval: #1080198 #1086912

python-pyani

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-21
  • Dependencies leading to autoremoval: phyml
  • Bugs in dependencies leading to autoremoval: #1086912

python-treetime

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-21
  • Dependencies leading to autoremoval: phyml
  • Bugs in dependencies leading to autoremoval: #1086912

r-bioc-biovizbase

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

r-bioc-gsva

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

r-bioc-titancna

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

r-cran-gprofiler2

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

r-cran-rnexml

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

r-cran-sctransform

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

r-cran-webgestaltr

😟 Autoremoval

Package marked for automatic removal:

  • Will be removed on: 2024-12-06
  • Dependencies leading to autoremoval: r-cran-dplyr
  • Bugs in dependencies leading to autoremoval: #1072630

unifrac

😟 Autoremoval

Package marked for automatic removal:

python-cogent

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 313 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest, missingbuild
  • Migrates after: numba

Piuparts failed:

q2cli

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 124 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest, depends
  • Migrates after: qiime

Piuparts failed:

q2-dada2

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 233 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: q2-types, qiime

Piuparts failed:

qiime

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 88 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

Piuparts failed:

rdkit

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 17 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

Piuparts failed:

sra-sdk

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 36 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends, depends
  • Invalidated by another package
  • Blocked by: ncbi-vdb

Piuparts failed:

  • Version: 2.8.1-2+dfsg-2~bpo8+1
  • Sections: jessie2bpo

bcbio

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 261 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Migrates after: freebayes, hts-nim-tools, mosdepth

genomicsdb

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 363 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest, depends
  • Migrates after: openmpi

intake

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 236 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

libbio-tools-run-alignment-tcoffee-perl

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 261 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: bioperl-run

nim-hts

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 131 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: nim

python-anndata

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 280 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: python-array-api-compat

python-loompy

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 313 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends, depends
  • Invalidated by another package
  • Blocked by: numba

python-pyflow

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 45 days.
  • Verdict: Rejected/violates migration policy/introduces a regression

q2-alignment

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 88 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: q2-types, qiime

q2-cutadapt

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 88 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: q2-types, qiime

q2-demux

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 99 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: q2-types, qiime

q2-emperor

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 88 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends, depends
  • Invalidated by another package
  • Blocked by: qiime
  • Migrates after: q2-types

q2-feature-classifier

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 267 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: q2-feature-table, q2-quality-control, q2-taxa, q2-types, qiime

q2-feature-table

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 88 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: q2-types, qiime

q2-fragment-insertion

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 88 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: q2-types, qiime

q2-phylogeny

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 99 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: q2-alignment, q2-types, qiime

q2-quality-control

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 91 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: q2-feature-table, q2-taxa, qiime

q2-quality-filter

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 88 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: q2-types, qiime

q2-sample-classifier

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 88 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: q2-feature-table, q2-types, qiime

q2-taxa

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 88 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends, depends
  • Invalidated by another package
  • Blocked by: qiime
  • Migrates after: q2-types

q2-types

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 88 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: qiime

r-cran-seurat

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 145 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: r-cran-uwot

sumalibs

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 91 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

toil

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 130 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

libpwiz

😟 Migration

😟 Install/upgrade

😑 Tests missing

Migration from unstable to testing is blocked:

  • Not in testing for 106 days.
  • Verdict: Rejected/violates migration policy/introduces a regression

Piuparts failed:

Continuous integration (CI) tests are missing.

ncbi-vdb

😟 Migration

😟 Install/upgrade

😑 Tests missing

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 36 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends, depends
  • Invalidated by another package
  • Blocked by: mbedtls

Piuparts failed:

  • Version: 2.8.1+dfsg-2~bpo8+1
  • Sections: jessie2bpo

Continuous integration (CI) tests are missing.

libchado-perl

😟 CI

😟 Install/upgrade

😑 Tests missing

Continuous integration (CI) tests are failing:

Piuparts failed:

  • Version: 1.23-2
  • Sections: jessie

Continuous integration (CI) tests are missing.

bioperl

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

consensuscore

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

ctdconverter

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

htseq

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

htsjdk

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

libace-perl

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

libbio-tools-run-alignment-clustalw-perl

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 54 days.
  • Verdict: No excuse
  • Migrates after: bioperl-run

librcsb-core-wrapper

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

libsbml

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

ncbi-tools6

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

pbbam

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

python-biotools

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

python-freecontact

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

python-pysam

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

  • Version: 0.9.1.4+ds-1~bpo8+1
  • Sections: jessie2bpo

r-bioc-altcdfenvs

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

r-bioc-biocgenerics

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

r-bioc-genomeinfodb

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

r-cran-nmf

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

seqan2

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

  • Version: 2.4.0+dfsg-8~bpo8+1
  • Sections: jessie2bpo

nim-kexpr

😟 Migration

Migration from unstable to testing is blocked:

  • Not in testing for 131 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: nim

nim-lapper

😟 Migration

Migration from unstable to testing is blocked:

  • Not in testing for 131 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: nim

pytorch

😟 Migration

Migration from unstable to testing is blocked:

  • Not in testing for 314 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: openmpi

q2-metadata

😟 Migration

Migration from unstable to testing is blocked:

  • Not in testing for 88 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends, depends
  • Invalidated by another package
  • Blocked by: qiime
  • Migrates after: q2-quality-filter, q2-types

r-bioc-genomicranges

😟 Migration

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 26 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

r-cran-amap

😟 Migration

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 26 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest

abpoa

😟 CI

Continuous integration (CI) tests are failing:

biomaj3

😟 CI

Continuous integration (CI) tests are failing:

cyvcf2

😟 CI

Continuous integration (CI) tests are failing:

gatb-core

😟 CI

Continuous integration (CI) tests are failing:

golang-github-biogo-hts

😟 CI

Continuous integration (CI) tests are failing:

joypy

😟 CI

Continuous integration (CI) tests are failing:

libbio-db-biofetch-perl

😟 CI

Continuous integration (CI) tests are failing:

libbio-db-embl-perl

😟 CI

Continuous integration (CI) tests are failing:

libbio-db-ncbihelper-perl

😟 CI

Continuous integration (CI) tests are failing:

libgoby-java

😟 CI

Continuous integration (CI) tests are failing:

libzerg-perl

😟 CI

Continuous integration (CI) tests are failing:

pybel

😟 CI

Continuous integration (CI) tests are failing:

pyranges

😟 CI

Continuous integration (CI) tests are failing:

python-airr

😟 CI

Continuous integration (CI) tests are failing:

python-alignlib

😟 CI

Continuous integration (CI) tests are failing:

python-bel-resources

😟 CI

Continuous integration (CI) tests are failing:

python-gtfparse

😟 CI

Continuous integration (CI) tests are failing:

python-pangolearn

😟 CI

Continuous integration (CI) tests are failing:

python-parasail

😟 CI

Continuous integration (CI) tests are failing:

python-pybedtools

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-annotate

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-annotationdbi

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-arrayexpress

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-biobase

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-biomformat

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-bsgenome

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-complexheatmap

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-ensembldb

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-geneplotter

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-genomicfeatures

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-go.db

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-gseabase

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-hypergraph

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-metagenomeseq

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-oligoclasses

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-org.hs.eg.db

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-phyloseq

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-purecn

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-qusage

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-s4vectors

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-tximport

😟 CI

Continuous integration (CI) tests are failing:

r-bioc-variantannotation

😟 CI

Continuous integration (CI) tests are failing:

r-cran-phangorn

😟 CI

Continuous integration (CI) tests are failing:

r-cran-pscbs

😟 CI

Continuous integration (CI) tests are failing:

seqan3

😟 CI

Continuous integration (CI) tests are failing:

shasta

😟 CI

Continuous integration (CI) tests are failing:

unifrac-tools

😟 CI

Continuous integration (CI) tests are failing:

bambamc

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

biojava-live

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

bio-tradis

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

hdf5

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

jebl2

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

libbio-mage-utils-perl

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

libbioparser-dev

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

libbpp-core

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

libbpp-phyl

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

libbpp-phyl-omics

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

libbpp-popgen

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

libbpp-qt

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

libbpp-raa

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

libbpp-seq

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

libbpp-seq-omics

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

libdivsufsort

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

libgenome

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

libmems

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

  • Version: 1.6.0+4725-1~bpo8+1
  • Sections: jessie2bpo

Continuous integration (CI) tests are missing.

libmuscle

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

libpal-java

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

libpsortb

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

libseqlib

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

openms

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

pbseqlib

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

  • Version: 0~20161219-1~bpo8+1
  • Sections: jessie2bpo

Continuous integration (CI) tests are missing.

python-cgelib

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

sbmltoolbox

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

srf

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

ssm

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

bamtools

😟 Install/upgrade

Piuparts failed:

bioperl-run

😟 Install/upgrade

Piuparts failed:

biosquid

😟 Install/upgrade

Piuparts failed:

ctdopts

😟 Install/upgrade

Piuparts failed:

fast5

😟 Install/upgrade

Piuparts failed:

fermi-lite

😟 Install/upgrade

Piuparts failed:

freecontact

😟 Install/upgrade

Piuparts failed:

genometools

😟 Install/upgrade

Piuparts failed:

htslib

😟 Install/upgrade

Piuparts failed:

kmer

😟 Install/upgrade

Piuparts failed:

libai-fann-perl

😟 Install/upgrade

Piuparts failed:

libbio-mage-perl

😟 Install/upgrade

Piuparts failed:

libbio-tools-phylo-paml-perl

😟 Migration

Migration from unstable to testing is blocked:

  • Not in testing for 54 days.
  • Verdict: No excuse
  • Migrates after: bioperl-run

libdisorder

😟 Install/upgrade

Piuparts failed:

libedlib

😟 Install/upgrade

Piuparts failed:

libfastahack

😟 Install/upgrade

Piuparts failed:

  • Version: 0.0+20160702-1~bpo8+1
  • Sections: jessie2bpo

libgo-perl

😟 Install/upgrade

Piuparts failed:

libnhgri-blastall-perl

😟 Install/upgrade

Piuparts failed:

librostlab

😟 Install/upgrade

Piuparts failed:

librostlab-blast

😟 Install/upgrade

Piuparts failed:

libsmithwaterman

😟 Install/upgrade

Piuparts failed:

  • Version: 0.0+git20160702.2610e25-4~bpo9+1
  • Sections: stretch2bpo

libsort-key-top-perl

😟 Install/upgrade

Piuparts failed:

libssw

😟 Install/upgrade

Piuparts failed:

libtabixpp

😟 Install/upgrade

Piuparts failed:

libthread-pool

😟 Install/upgrade

Piuparts failed:

libvcflib

😟 Install/upgrade

Piuparts failed:

  • Version: 1.0.0~rc1+dfsg1-6~bpo9+1
  • Sections: stretch2bpo

libzerg

😟 Install/upgrade

Piuparts failed:

mcl

😟 Install/upgrade

Piuparts failed:

minimap2

😟 Install/upgrade

Piuparts failed:

python-cobra

😟 Install/upgrade

Piuparts failed:

python-csb

😟 Install/upgrade

Piuparts failed:

python-cutadapt

😟 Install/upgrade

Piuparts failed:

python-dendropy

😟 Install/upgrade

Piuparts failed:

  • Version: 4.2.0+dfsg-1~bpo8+1
  • Sections: jessie2bpo

python-pymummer

😟 Install/upgrade

Piuparts failed:

r-bioc-affy

😟 Install/upgrade

Piuparts failed:

r-bioc-graph

😟 Install/upgrade

Piuparts failed:

r-bioc-iranges

😟 Install/upgrade

Piuparts failed:

r-bioc-limma

😟 Install/upgrade

Piuparts failed:

r-bioc-snpstats

😟 Install/upgrade

Piuparts failed:

r-cran-boolnet

😟 Install/upgrade

Piuparts failed:

r-cran-distory

😟 Install/upgrade

Piuparts failed:

r-cran-dt

😟 Install/upgrade

Piuparts failed:

r-cran-fastcluster

😟 Install/upgrade

Piuparts failed:

r-cran-genetics

😟 Install/upgrade

Piuparts failed:

r-cran-rncl

😟 Install/upgrade

Piuparts failed:

r-cran-rocr

😟 Install/upgrade

Piuparts failed:

r-cran-seqinr

😟 Install/upgrade

Piuparts failed:

reprof

😟 Install/upgrade

Piuparts failed:

ruby-bio

😟 Install/upgrade

Piuparts failed:

samtools-legacy

😟 Install/upgrade

Piuparts failed:

snp-sites

😟 Install/upgrade

Piuparts failed:

spoa

😟 Install/upgrade

Piuparts failed:

staden-io-lib

😟 Install/upgrade

Piuparts failed:

biojava4-live

😑 Tests missing

Continuous integration (CI) tests are missing.

btllib

😑 Tests missing

Continuous integration (CI) tests are missing.

capsule-maven-nextflow

😑 Tests missing

Continuous integration (CI) tests are missing.

cdk

😑 Tests missing

Continuous integration (CI) tests are missing.

cthreadpool

😑 Tests missing

Continuous integration (CI) tests are missing.

gatk-bwamem

😑 Tests missing

Continuous integration (CI) tests are missing.

gatk-fermilite

😑 Tests missing

Continuous integration (CI) tests are missing.

gatk-native-bindings

😑 Tests missing

Continuous integration (CI) tests are missing.

htscodecs

😑 Tests missing

Continuous integration (CI) tests are missing.

icb-utils

😑 Tests missing

Continuous integration (CI) tests are missing.

libbiosoup-dev

😑 Tests missing

Continuous integration (CI) tests are missing.

libgkarrays

😑 Tests missing

Continuous integration (CI) tests are missing.

libjloda-java

😑 Tests missing

Continuous integration (CI) tests are missing.

libmaus2

😑 Tests missing

Continuous integration (CI) tests are missing.

libqes

😑 Tests missing

Continuous integration (CI) tests are missing.

librdp-taxonomy-tree-java

😑 Tests missing

Continuous integration (CI) tests are missing.

libstatgen

😑 Tests missing

Continuous integration (CI) tests are missing.

libvbz-hdf-plugin

😑 Tests missing

Continuous integration (CI) tests are missing.

libwfa2

😑 Tests missing

Continuous integration (CI) tests are missing.

milib

😑 Tests missing

Continuous integration (CI) tests are missing.

pbcopper

😑 Tests missing

Continuous integration (CI) tests are missing.

savvy

😑 Tests missing

Continuous integration (CI) tests are missing.

xxsds-dynamic

😑 Tests missing

Continuous integration (CI) tests are missing.