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Phylogeny - Quality Assurance

Summary

Autoremovals: 7

Migration issues: 3

CI failures: 4

Install issues: 31

No issues: 4/41

Debian Med phylogeny packages

This lists Debian packages related to phylogeny for use in life sciences. The purpose of this compilation of packages is to have a handy subset of from the med-bio metapackage which contains a lot more than only phylogeny related software.

😟 Autoremoval

😟 Migration

😟 Install/upgrade

Package marked for automatic removal:

Will be removed on: 2024-12-21
Bugs leading to autoremoval: #1086912
Will result in removal of arb ariba augur busco cctbx changeo cnvkit cutesv dials elpa-snakemake gasic graphlan gubbins hinge insilicoseq jmodeltest kallisto kaptive kineticstools kleborate mcaller mdanalysis metaphlan mirtop nanofilt nanolyse ncbi-acc-download optimir parsnp peptidebuilder pigx-rnaseq pizzly presto prottest pyensembl pyfastx python-bcbio-gff python-biopython python-cai python-cgecore python-cooler python-datacache python-gffutils python-nanoget python-pauvre python-pbcommand python-pbcore python-prodigy python-pyani python-pyfaidx python-seqcluster python-treetime qcat qcumber recan resfinder seqmagick seqsero snakemake srst2 trinityrnaseq virulencefinder xpore yanagiba with total popcon score of 0

Migration from unstable to testing is blocked:

Has been trying to migrate for 14 days.
Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
Reason: depends
Invalidated by another package
Blocked by: openmpi

Piuparts failed:

Version: 3:3.2.0+dfsg-7~bpo8+1
Sections: jessie2bpo

😟 Autoremoval

😟 Migration

😟 Install/upgrade

Package marked for automatic removal:

Will be removed on: 2024-12-11
Bugs leading to autoremoval: #1086203 #1086907
Will result in removal of arb with total popcon score of 0

Migration from unstable to testing is blocked:

Has been trying to migrate for 57 days.
Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
Reason: depends
Invalidated by another package
Blocked by: openmpi

Piuparts failed:

Version: 5.2-8
Sections: jessie2Xstretch-rcmd jessie-lts2stretch jessie2stretch-rcmd

😟 Autoremoval

😟 Install/upgrade

😑 Tests missing

Package marked for automatic removal:

Will be removed on: 2024-12-13
Dependencies leading to autoremoval: pocl
Bugs in dependencies leading to autoremoval: #1086460

Piuparts failed:

Version: 1.8.4+dfsg.1-1~bpo8+1
Sections: jessie2bpo

Continuous integration (CI) tests are missing.

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

Will be removed on: 2024-12-13
Dependencies leading to autoremoval: pocl
Bugs in dependencies leading to autoremoval: #1086460

Piuparts failed:

Version: 3.2.6+dfsg-1
Sections: jessie2stretch-rcmd jessie2Xstretch-rcmd jessie2stretch

😟 Autoremoval

😑 Tests missing

Package marked for automatic removal:

Will be removed on: 2024-12-21
Dependencies leading to autoremoval: phyml
Bugs in dependencies leading to autoremoval: #1086912

Continuous integration (CI) tests are missing.

😟 Autoremoval

Package marked for automatic removal:

Will be removed on: 2024-12-21
Dependencies leading to autoremoval: phyml
Bugs in dependencies leading to autoremoval: #1086912

python-treetime

😟 Autoremoval

Package marked for automatic removal:

Will be removed on: 2024-12-21
Dependencies leading to autoremoval: phyml
Bugs in dependencies leading to autoremoval: #1086912

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Migration from unstable to testing is blocked:

Not in testing for 682 days.
Verdict: Rejected/violates migration policy/introduces a regression
Reason: autopkgtest

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Piuparts failed:

Version: 3.4+dfsg-2
Sections: sid-broken-symlinks

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Piuparts failed:

Version: 1:3.8.31+dfsg-2
Sections: jessie2stretch jessie2Xstretch jessie-lts2stretch

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Piuparts failed:

Version: 1.0-10
Sections: jessie2Xstretch-rcmd jessie2stretch

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Version: 0.603-2
Sections: jessie2Xstretch jessie2Xstretch-rcmd jessie2stretch-rcmd

Continuous integration (CI) tests are missing.

😟 Install/upgrade

Piuparts failed:

Version: 1.3.1-4~bpo8+1
Sections: jessie2bpo

😟 Install/upgrade

Piuparts failed:

Version: 2.1+lgpl-5
Sections: jessie2stretch jessie2Xstretch-rcmd

😟 Install/upgrade

Piuparts failed:

Version: 2.1+lgpl-5
Sections: jessie2stretch jessie2stretch-rcmd jessie2Xstretch-rcmd jessie-lts2stretch

😟 Install/upgrade

Piuparts failed:

Version: 2.2.1-8
Sections: jessie2stretch jessie2Xstretch-rcmd jessie2stretch-rcmd jessie2Xstretch

😟 Install/upgrade

Piuparts failed:

Version: 1.0.2-9
Sections: jessie2stretch-rcmd jessie2stretch jessie2Xstretch jessie2Xstretch-rcmd jessie-lts2stretch

😟 Install/upgrade

Piuparts failed:

Version: 2.4.0-2
Sections: jessie-lts2stretch jessie2Xstretch jessie2stretch-rcmd jessie2Xstretch-rcmd

😟 Install/upgrade

Piuparts failed:

Version: 1.2.2-11
Sections: jessie2Xstretch-rcmd jessie2stretch-rcmd jessie2stretch

😟 Install/upgrade

Piuparts failed:

Version: 2.1.9-1
Sections: jessie-lts2stretch

😟 Install/upgrade

Piuparts failed:

Version: 1.4.2+dfsg-2~bpo8+1
Sections: jessie2bpo

😟 Install/upgrade

Piuparts failed:

Version: 1.5.3+dfsg-2~bpo8+1
Sections: jessie2bpo

😟 Install/upgrade

Piuparts failed:

Version: 1:2.03+20110620-3
Sections: jessie2stretch jessie2stretch-rcmd jessie2Xstretch jessie2Xstretch-rcmd

😟 Install/upgrade

Piuparts failed:

Version: 3.2.3-1
Sections: jessie2stretch jessie2Xstretch-rcmd jessie-lts2stretch

😟 Install/upgrade

Piuparts failed:

Version: 2.4-7
Sections: jessie2stretch-rcmd jessie2Xstretch-rcmd

😟 Install/upgrade

Piuparts failed:

Version: 1:3.696+dfsg-5
Sections: jessie-lts2stretch jessie2stretch jessie2Xstretch jessie2stretch-rcmd jessie2Xstretch-rcmd

😟 Install/upgrade

Piuparts failed:

Version: 2.0+20060928-4
Sections: jessie-lts2stretch jessie2stretch jessie2Xstretch-rcmd jessie2stretch-rcmd jessie2Xstretch

😟 Install/upgrade

Piuparts failed:

Version: 1.2.33+svn0120106-2.1
Sections: jessie2stretch-rcmd jessie2stretch jessie2Xstretch-rcmd jessie-lts2stretch

😟 Install/upgrade

Piuparts failed:

Version: 1.4-5
Sections: jessie2stretch-rcmd jessie2Xstretch-rcmd jessie2Xstretch jessie-lts2stretch

😟 Install/upgrade

Piuparts failed:

Version: 1.12-11
Sections: jessie2stretch jessie2stretch-rcmd jessie2Xstretch jessie2Xstretch-rcmd jessie-lts2stretch

😟 Install/upgrade

Piuparts failed:

Version: 1:4.6.1.2-2~bpo8+1
Sections: jessie2bpo

😟 Install/upgrade

Piuparts failed:

Version: 1.1.3-4
Sections: jessie2Xstretch-rcmd jessie2stretch jessie2stretch-rcmd jessie-lts2stretch

😟 Install/upgrade

Piuparts failed:

Version: 11.00.8cbe486-5
Sections: jessie2Xstretch-rcmd jessie2stretch jessie2Xstretch jessie2stretch-rcmd

😟 Install/upgrade

Piuparts failed:

Version: 20160521+dfsg-2
Sections: jessie-lts2stretch jessie2Xstretch

😟 Install/upgrade

Piuparts failed:

Version: 0.5.1+20100823-4
Sections: jessie2stretch-rcmd jessie2Xstretch-rcmd

😑 Tests missing

Continuous integration (CI) tests are missing.

😑 Tests missing

Continuous integration (CI) tests are missing.