Summary

Autoremovals: 2

Migration issues: 1

CI failures: 4

Install issues: 31

No issues: 6/41

Debian Med phylogeny packages

This lists Debian packages related to phylogeny for use in life sciences. The purpose of this compilation of packages is to have a handy subset of from the med-bio metapackage which contains a lot more than only phylogeny related software.

beast-mcmc

😟 Autoremoval

😟 Install/upgrade

😑 Tests missing

Package marked for automatic removal:

Will be removed on: 2025-01-17
Dependencies leading to autoremoval: pocl
Bugs in dependencies leading to autoremoval: #1086460

Piuparts failed:

Version: 1.8.4+dfsg.1-1~bpo8+1
Sections: jessie2bpo

Continuous integration (CI) tests are missing.

mrbayes

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

Will be removed on: 2025-01-17
Dependencies leading to autoremoval: pocl
Bugs in dependencies leading to autoremoval: #1086460

Piuparts failed:

Version: 3.2.6+dfsg-1
Sections: jessie2stretch-rcmd jessie2stretch jessie2Xstretch-rcmd

pplacer

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Migration from unstable to testing is blocked:

Not in testing for 715 days.
Verdict: Rejected/violates migration policy/introduces a regression
Reason: autopkgtest

hmmer

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Piuparts failed:

Version: 3.4+dfsg-2
Sections: sid-broken-symlinks

muscle

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Piuparts failed:

Version: 1:3.8.31+dfsg-2
Sections: jessie2Xstretch jessie2stretch jessie-lts2stretch

proda

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Piuparts failed:

Version: 1.0-10
Sections: jessie2Xstretch-rcmd jessie2stretch

proalign

😟 Install/upgrade

😑 Tests missing

Piuparts failed:

Version: 0.603-2
Sections: jessie2Xstretch-rcmd jessie2stretch-rcmd jessie2Xstretch

Continuous integration (CI) tests are missing.

altree

😟 Install/upgrade

Piuparts failed:

Version: 1.3.1-4~bpo8+1
Sections: jessie2bpo

clustalw

😟 Install/upgrade

Piuparts failed:

Version: 2.1+lgpl-5
Sections: jessie2Xstretch-rcmd jessie2stretch

clustalx

😟 Install/upgrade

Piuparts failed:

Version: 2.1+lgpl-5
Sections: jessie2stretch jessie2stretch-rcmd jessie2Xstretch-rcmd jessie-lts2stretch

dialign

😟 Install/upgrade

Piuparts failed:

Version: 2.2.1-8
Sections: jessie2stretch-rcmd jessie2Xstretch jessie2Xstretch-rcmd jessie2stretch

dialign-t

😟 Install/upgrade

Piuparts failed:

Version: 1.0.2-9
Sections: jessie2stretch jessie2stretch-rcmd jessie2Xstretch jessie2Xstretch-rcmd jessie-lts2stretch

exonerate

😟 Install/upgrade

Piuparts failed:

Version: 2.4.0-2
Sections: jessie-lts2stretch jessie2Xstretch jessie2Xstretch-rcmd jessie2stretch-rcmd

fastdnaml

😟 Install/upgrade

Piuparts failed:

Version: 1.2.2-11
Sections: jessie2stretch jessie2stretch-rcmd jessie2Xstretch-rcmd

fasttree

😟 Install/upgrade

Piuparts failed:

Version: 2.1.9-1
Sections: jessie-lts2stretch

figtree

😟 Install/upgrade

Piuparts failed:

Version: 1.4.2+dfsg-2~bpo8+1
Sections: jessie2bpo

iqtree

😟 Install/upgrade

Piuparts failed:

Version: 1.5.3+dfsg-2~bpo8+1
Sections: jessie2bpo

kalign

😟 Install/upgrade

Piuparts failed:

Version: 1:2.03+20110620-3
Sections: jessie2Xstretch jessie2Xstretch-rcmd jessie2stretch-rcmd jessie2stretch

mustang

😟 Install/upgrade

Piuparts failed:

Version: 3.2.3-1
Sections: jessie2Xstretch-rcmd jessie2stretch jessie-lts2stretch

njplot

😟 Install/upgrade

Piuparts failed:

Version: 2.4-7
Sections: jessie2stretch-rcmd jessie2Xstretch-rcmd

phylip

😟 Install/upgrade

Piuparts failed:

Version: 1:3.696+dfsg-5
Sections: jessie-lts2stretch jessie2Xstretch jessie2Xstretch-rcmd jessie2stretch-rcmd jessie2stretch

phyml

😟 Install/upgrade

Piuparts failed:

Version: 3:3.2.0+dfsg-7~bpo8+1
Sections: jessie2bpo

poa

😟 Install/upgrade

Piuparts failed:

Version: 2.0+20060928-4
Sections: jessie-lts2stretch jessie2Xstretch-rcmd jessie2Xstretch jessie2stretch jessie2stretch-rcmd

populations

😟 Install/upgrade

Piuparts failed:

Version: 1.2.33+svn0120106-2.1
Sections: jessie2Xstretch-rcmd jessie2stretch jessie2stretch-rcmd jessie-lts2stretch

probalign

😟 Install/upgrade

Piuparts failed:

Version: 1.4-5
Sections: jessie2Xstretch jessie2Xstretch-rcmd jessie2stretch-rcmd jessie-lts2stretch

probcons

😟 Install/upgrade

Piuparts failed:

Version: 1.12-11
Sections: jessie-lts2stretch jessie2Xstretch jessie2stretch jessie2stretch-rcmd jessie2Xstretch-rcmd

seaview

😟 Install/upgrade

Piuparts failed:

Version: 1:4.6.1.2-2~bpo8+1
Sections: jessie2bpo

sigma-align

😟 Install/upgrade

Piuparts failed:

Version: 1.1.3-4
Sections: jessie2stretch jessie2Xstretch-rcmd jessie2stretch-rcmd jessie-lts2stretch

t-coffee

😟 Install/upgrade

Piuparts failed:

Version: 11.00.8cbe486-5
Sections: jessie2Xstretch-rcmd jessie2Xstretch jessie2stretch-rcmd jessie2stretch

tm-align

😟 Install/upgrade

Piuparts failed:

Version: 20160521+dfsg-2
Sections: jessie-lts2stretch jessie2Xstretch

tree-puzzle

😟 Install/upgrade

Piuparts failed:

Version: 5.2-8
Sections: jessie-lts2stretch jessie2Xstretch-rcmd jessie2stretch-rcmd

treeviewx

😟 Install/upgrade

Piuparts failed:

Version: 0.5.1+20100823-4
Sections: jessie2stretch-rcmd jessie2Xstretch-rcmd

jmodeltest

😑 Tests missing

Continuous integration (CI) tests are missing.

spread-phy

😑 Tests missing

Continuous integration (CI) tests are missing.

treeview

😑 Tests missing

Continuous integration (CI) tests are missing.