Summary

Autoremovals: 1

Migration issues: 7

CI failures: 5

Install issues: 18

No issues: 4/23

Debian Med bioinformatics applications usable in Next Generation Sequencing

It aims at gettting packages which specialize in the processing or interpretation of data generated with next- (and later-) generation high-thoughput sequencing technologies.

blasr

😟 Autoremoval

😟 Install/upgrade

Package marked for automatic removal:

Will be removed on: 2024-05-03
Bugs leading to autoremoval: #1067374
Will result in removal of pbsuite with total popcon score of 0

Piuparts failed:

Version: 5.3+0-1~bpo8+1
Sections: jessie2bpo

python-anndata

😟 CI

😟 Migration

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Migration from unstable to testing is blocked:

Not in testing for 68 days.
Verdict: Rejected/violates migration policy/introduces a regression
Reason: autopkgtest
Migrates after: python-array-api-compat

sra-sdk

😟 CI

😟 Migration

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Migration from unstable to testing is blocked:

Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
Reason: depends
Invalidated by another package
Blocked by: hdf5
Migrates after: file

Piuparts failed:

Version: 3.0.3+dfsg-6
Sections: sid-broken-symlinks

htslib

😟 Migration

😟 Install/upgrade

Migration from unstable to testing is blocked:

Has been trying to migrate for 57 days.
Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
Reason: depends
Invalidated by another package
Blocked by: curl

Piuparts failed:

Version: 1.7-2~bpo9+1
Sections: stretch2bpo

bowtie

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Piuparts failed:

Version: 1.3.1-3
Sections: oldstable222sid

daligner

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Piuparts failed:

Version: 1.0+20160927-1~bpo8+1
Sections: jessie2bpo

picard-tools

😟 CI

😟 Install/upgrade

Continuous integration (CI) tests are failing:

Testsuite: autopkgtest

Piuparts failed:

Version: 3.1.1+dfsg-1
Sections: sid-broken-symlinks oldstable222sid

bcftools

😟 Migration

😟 Install/upgrade

Migration from unstable to testing is blocked:

Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
Reason: depends
Invalidated by another package
Blocked by: htslib

Piuparts failed:

Version: 1.8-1~bpo9+1
Sections: stretch2bpo

libvcflib

😟 Migration

😟 Install/upgrade

Migration from unstable to testing is blocked:

Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
Reason: depends
Invalidated by another package
Blocked by: libtabixpp

Piuparts failed:

Version: 1.0.0~rc1+dfsg1-6~bpo9+1
Sections: stretch2bpo

rna-star

😟 Migration

😟 Install/upgrade

Migration from unstable to testing is blocked:

Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
Reason: depends
Invalidated by another package
Blocked by: htslib

Piuparts failed:

Version: 2.7.0a+dfsg-1~bpo9+1
Sections: stretch2bpo

samtools

😟 Migration

😟 Install/upgrade

Migration from unstable to testing is blocked:

Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
Reason: depends
Invalidated by another package
Blocked by: htslib

Piuparts failed: