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Next generation sequencing - Quality Assurance

Summary

Autoremovals: 0

Migration issues: 3

CI failures: 5

Install issues: 18

No issues: 4/23

Debian Med bioinformatics applications usable in Next Generation Sequencing

It aims at gettting packages which specialize in the processing or interpretation of data generated with next- (and later-) generation high-thoughput sequencing technologies.

sra-sdk

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Has been trying to migrate for 36 days.
  • Verdict: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
  • Reason: build-depends, depends
  • Invalidated by another package
  • Blocked by: ncbi-vdb

Piuparts failed:

  • Version: 2.8.1-2+dfsg-2~bpo8+1
  • Sections: jessie2bpo

python-anndata

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Migration

Continuous integration (CI) tests are failing:

Migration from unstable to testing is blocked:

  • Not in testing for 280 days.
  • Verdict: Rejected/violates migration policy/introduces a regression
  • Reason: autopkgtest
  • Migrates after: python-array-api-compat

blasr

๐Ÿ˜Ÿ Migration

๐Ÿ˜Ÿ Install/upgrade

Migration from unstable to testing is blocked:

  • Not in testing for 210 days.
  • Verdict: Rejected/violates migration policy/introduces a regression

Piuparts failed:

bowtie

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

daligner

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

  • Version: 1.0+20160927-1~bpo8+1
  • Sections: jessie2bpo

picard-tools

๐Ÿ˜Ÿ CI

๐Ÿ˜Ÿ Install/upgrade

Continuous integration (CI) tests are failing:

Piuparts failed:

mhap

๐Ÿ˜Ÿ Install/upgrade

๐Ÿ˜‘ Tests missing

Piuparts failed:

Continuous integration (CI) tests are missing.

bcftools

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

bedtools

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

bwa

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

htslib

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

last-align

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

libvcflib

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

  • Version: 1.0.0~rc1+dfsg1-6~bpo9+1
  • Sections: stretch2bpo

maq

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

r-bioc-hilbertvis

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

rna-star

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

samtools

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

ssake

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed:

velvet

๐Ÿ˜Ÿ Install/upgrade

Piuparts failed: